Input parameters:

  Query = AT4G34280.1 (Len=783)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G34280.1, Len=783):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATLTEIATLEEKYIELCKMHGILPNTAILSAFFEAEVKKSRNQRCIMNLYVDRVKYDDYLPLLELCNEINTSEVQGIDL 80  
WD40-rpts                                                                                      

Query       81 FVRSACSLEDHYALPLIRSVNQKLRVVHLHDSFGKNFWQDVFFQGLSCKVLNVRSMHIHKLNIVGEFTQLHTLILDKNRI 160 
WD40-rpts                                                                                      

Query      161 VGFGEDCFSCMPKLTYLSMCDTLVSDLWTSAAALLKLPSLKELRFQIWISCSDSSPLNSESSPSSSTKDDINTFIESDPP 240 
WD40-rpts                                                                                      

Query      241 VEADMWDVAEQMDPSLPVEETLHSMDFSYKIPEQDDLDSHVSVSAGLNGEVLMREKVRRGKMPYQPKDVSPVDTFTRQFG 320 
WD40-rpts                                                                                      

Query      321 NVGLKYISSKASPICSEKHYRMYMINSLPKLQVLDNLAIRKSDRDKAIETYSANFEDLPYKRKKESVVRVLENREKRSSK 400 
WD40-rpts                                                                                      

Query      401 GKSQNSYKRSLCAAKMGSPASPLLHSLPFLSSRIQQEDDNSRLCPRQFEYHPLDPSLMVFGTLDGEVVVLNHESGKIFRY 480 
WD40-rpts                                     (_________________WD 1_________________)   (_____

Query      481 IPSNGSQSTILGLCWLKIYPSMVIAGSANGSLKLYDIQKASSTVTTSSHSTSGSVTFDEFDQLTSVHANSTDQLFLASGY 560 
WD40-rpts      _____________WD 2__________________)   (______________________WD 3______________

Query      561 SKDVALYDIGRGTRLQVFANMHQEHINVVKFSNHSPFLFATSSFDKDVKLWDLRQEPSRPCYTASSTKGNVMVCFSPDDR 640 
WD40-rpts      _______)   (__________________WD 4_________________)(___________________WD 5____

Query      641 YLLASAVDNEVRQLLTVDGRLHLNFEIVPRVSSMNYTRSYYMNGNDYIISGSCDENVIRVCCAQTGRRLRDVTLEGNGSD 720 
WD40-rpts      ______________)   (___________________WD 6___________________)            (_____

Query      721 FSMMYVQSLRGDPFRDFNMSVLAAYARSSSLSEIVKVNLLASRDSTAEESHGLRSYPSSSMGG 783 
WD40-rpts      _______________WD 7___________________)                        

7 WD40-repeats found in QUERY=AT4G34280.1 (Len=783):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   432-471      5.49  341.27  0.00157       17.5%     46.37
  WD 2:  Seg 10   475-516      6.73  392.65  0.00032       22.5%     57.20
  WD 3:  Seg 14   520-568      6.77  394.24  0.00030       17.5%     57.35
  WD 4:  Seg 18   572-612      6.86  397.98  0.00027       30.0%     50.35
  WD 5:  Seg 22   613-655      7.25  413.97  0.00016       22.5%     56.79
  WD 6:  Seg 26   659-702      6.21  371.37  0.00062       10.0%     47.95
  WD 7:  Seg 31   715-759      6.39  378.46  0.00049       17.5%     45.67

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  432-471    -S-----R---IQQED--D-----N-SRLC----------PRQFEYHPLDPSLM-VFGTLDGEVVVLN
   WD 2  475-516    -G-----K---IFRYIPSN-----G-SQST----------ILGLCWLKIYPSMV-IAGSANGSLKLYD
   WD 3  520-568    -A-----S---STVTT--S-----S-HSTSGSVTFDEFDQLTSVHANS-TDQLF-LASGYSKDVALYD
   WD 4  572-612    -G-----T---RLQVF--A-----NMHQEH----------INVVKFSN-HSPFLFATSSFDKDVKLWD
   WD 5  613-655    LR-----QEPSRPCYT--A-----S-STKG----------NVMVCFSP-DDRYL-LASAVDNEVRQLL
   WD 6  659-702    -G-----R---LHLNF--EIVPRVS-SMNY----------TRSYYMNG-NDYII-SGSCDENVIRVCC
   WD 7  715-759    EGNGSDFS---MMYVQ--S-----L-RGDP----------FRDFNMSV-LAAYA-RSSSLSEIVKVNL

   WD40 Template    TG-----E---CLRTL--S-----G-HTSG----------VTSVSFSP-DGKRL-VSGSEDGTIKVWD