Input parameters:

  Query = AT4G33270.1 (Len=457)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G33270.1, Len=457):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAGMNNTSSHYKTQARCPLQEHFLPRKPSKENLDRFIPNRSAMNFDYAHFALTEGRKGKDQTAAVSSPSKEAYRKQLAE 80  
WD40-rpts                                                                                      

Query       81 TMNLNHTRILAFRNKPQAPVELLPSNHSASLHQQPKSVKPRRYIPQTSERTLDAPDIVDDFYLNLLDWGSANVLAIALDH 160 
WD40-rpts                       (_________________WD 1________________)                        

Query      161 TVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVGSLAWNNHILTT 240 
WD40-rpts            (___________________WD 2___________________)   (________________WD 3______

Query      241 GGMDGLIINNDVRIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKAL 320 
WD40-rpts      __________)    (_________________WD 4________________)         (________________

Query      321 AWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCSLLWSKNERELLSSHGFTQNQLTLWKYPSMVKMAELTG 400 
WD40-rpts      __WD 5__________________)   (_________________WD 6_________________)   (________

Query      401 HTSRVLYMAQSPDGCTVASAAGDETLRFWNVFGVPETAKKAAPKAVSEPFSHVNRIR 457 
WD40-rpts      _________WD 7________________)                           

7 WD40-repeats found in QUERY=AT4G33270.1 (Len=457):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    98-136      5.22  330.24  0.00220       15.0%     12.78
  WD 2:  Seg  9   167-210      8.41  462.22  3.7e-05       27.5%     57.94
  WD 3:  Seg 13   214-251      5.59  345.54  0.00137       37.5%     53.30
  WD 4:  Seg 17   256-294      9.54  508.68  8.7e-06       32.5%     51.86
  WD 5:  Seg 21   304-345      6.78  394.84  0.00030       35.0%     35.38
  WD 6:  Seg 24   349-388      5.48  341.14  0.00157       27.5%     48.01
  WD 7:  Seg 28   392-430      9.32  499.52  1.2e-05       35.0%     54.56

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   98-136    -A----PVELLPSN-HSASLHQQPKSVKPRRYI---P--QTSERTLDAPD
   WD 2  167-210    ASTGSTSELVTIDE-EKGPVTSINWAPDGRHVA---V--GLNNSEVQLWD
   WD 3  214-251    -N----RQLRTLKGGHQSRVGSLAW--NNHILT---T--GGMDGLIINND
   WD 4  256-294    -S----PIVETYRG-HTQEVCGLKWSGSGQQLA---S--GGNDNVVHIWD
   WD 5  304-345    -T----QWLHRLEE-HTSAVKALAWCPFQANLLATGG--GGGDRTIKFWN
   WD 6  349-388    -G----ACLNSVDT-G-SQVCSLLWSKNERELL---SSHGFTQNQLTLWK
   WD 7  392-430    -M----VKMAELTG-HTSRVLYMAQSPDGCTVA---S--AAGDETLRFWN

   WD40 Template    TG----ECLRTLSG-HTSGVTSVSFSPDGKRLV---S--GSEDGTIKVWD