Input parameters:

  Query = AT4G33260.2 (Len=441)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G33260.2, Len=441):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAGLNRCPLQEHFLPRKNSKENLDRFIPNRSAMNFDYAHFALTEERKGKDQSATVSSPSKEAYRKQLAETMNLNHTRIL 80  
WD40-rpts                                                                                      

Query       81 AFRNKPQAPVELLPSNHSASLHQQPKSVKPRRYIPQTSERTLDAPDIVDDFYLNLLDWGSANVLAIALDHTVYLWDASTG 160 
WD40-rpts             (_________________WD 1________________)(____________WD 2____________)(___

Query      161 STSELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVGSLAWNNHILTTGGMDGLIINN 240 
WD40-rpts      ________________WD 3___________________)   (________________WD 4________________

Query      241 DVRIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCPFQANLL 320 
WD40-rpts      )    (_________________WD 5________________)         (__________________WD 6____

Query      321 ATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCSLLWSKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLYMAQ 400 
WD40-rpts      ______________)   (_________________WD 7_________________)   (_________________W

Query      401 SPDGCTVASAAGDETLSCRAIFSCESYSMKLLKTKTTRKTH 441 
WD40-rpts      D 8________________)                     

8 WD40-repeats found in QUERY=AT4G33260.2 (Len=441):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    88-126      6.30  375.02  0.00055       15.0%     18.68
  WD 2:  Seg  6   127-156      3.24  248.52  0.02752       10.0%     42.99
  WD 3:  Seg  9   157-200      8.78  477.23  2.3e-05       27.5%     59.69
  WD 4:  Seg 13   204-241      5.90  358.37  0.00092       37.5%     53.97
  WD 5:  Seg 17   246-284      9.67  514.08  7.3e-06       32.5%     54.01
  WD 6:  Seg 21   294-335      7.05  405.97  0.00021       35.0%     42.45
  WD 7:  Seg 25   339-378      5.68  349.09  0.00123       27.5%     50.63
  WD 8:  Seg 29   382-420      9.11  491.12  1.5e-05       32.5%     57.57

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   88-126    -A----PVELLP-SNHSASLHQQPKSVKPRRY---IP--QTSERTLDAPD
   WD 2  127-156    ---------------IVDDFYLNLLDWGSANV---LA--IALDHTVYLWD
   WD 3  157-200    ASTGSTSELVTI-DEEKGPVTSINWAPDGRHV---AV--GLNNSEVQLWD
   WD 4  204-241    -N----RQLRTLKGGHQSRVGSLAW--NNHIL---TT--GGMDGLIINND
   WD 5  246-284    -S----PIVETY-RGHTQEVCGLKWSGSGQQL---AS--GGNDNVVHIWD
   WD 6  294-335    -T----QWLHRL-EEHTSAVKALAWCPFQANLLATGG--GGGDRTIKFWN
   WD 7  339-378    -G----ACLNSV-DTG-SQVCSLLWSKNEREL---LSSHGFTQNQLTLWK
   WD 8  382-420    -M----VKMAEL-TGHTSRVLYMAQSPDGCTV---AS--AAGDETLSCRA

   WD40 Template    TG----ECLRTL-SGHTSGVTSVSFSPDGKRL---VS--GSEDGTIKVWD