Input parameters:

  Query = AT4G33260.1 (Len=447)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G33260.1, Len=447):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAGLNRCPLQEHFLPRKNSKENLDRFIPNRSAMNFDYAHFALTEERKGKDQSATVSSPSKEAYRKQLAETMNLNHTRIL 80  
WD40-rpts                                                                             (________

Query       81 AFRNKPQAPVELLPSNHSASLHQQPKSVKPRRYIPQTSERTLDAPDIVDDFYLNLLDWGSANVLAIALDHTVYLWDASTG 160 
WD40-rpts      _________________WD 1________________________)                              (___

Query      161 STSELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVGSLAWNNHILTTGGMDGLIINN 240 
WD40-rpts      ________________WD 2___________________)   (________________WD 3________________

Query      241 DVRIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCPFQANLL 320 
WD40-rpts      )    (_________________WD 4________________)         (__________________WD 5____

Query      321 ATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCSLLWSKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLYMAQ 400 
WD40-rpts      ______________)   (_________________WD 6_________________)   (_________________W

Query      401 SPDGCTVASAAGDETLRFWNVFGVPETAKKAAPKAVAEPFSHVNRIR 447 
WD40-rpts      D 7________________)                           

7 WD40-repeats found in QUERY=AT4G33260.1 (Len=447):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    72-126      4.44  298.19  0.00595       15.0%     14.18
  WD 2:  Seg  8   157-200      8.34  459.10  4.0e-05       27.5%     58.22
  WD 3:  Seg 12   204-241      5.56  344.47  0.00142       37.5%     53.08
  WD 4:  Seg 16   246-284      9.51  507.65  8.9e-06       32.5%     51.89
  WD 5:  Seg 20   294-335      6.71  391.65  0.00033       35.0%     35.62
  WD 6:  Seg 23   339-378      5.42  338.65  0.00170       27.5%     47.77
  WD 7:  Seg 27   382-420      9.30  498.80  1.2e-05       35.0%     54.60

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   72-126    MNLNHTRILAFRNKPQAPVELLPSN-HSASLHQQPKSVKPRRYI---P--QTSERTLDAPD
   WD 2  157-200    AS-----------TGSTSELVTIDE-EKGPVTSINWAPDGRHVA---V--GLNNSEVQLWD
   WD 3  204-241    -N---------------RQLRTLKGGHQSRVGSLAW--NNHILT---T--GGMDGLIINND
   WD 4  246-284    -S---------------PIVETYRG-HTQEVCGLKWSGSGQQLA---S--GGNDNVVHIWD
   WD 5  294-335    -T---------------QWLHRLEE-HTSAVKALAWCPFQANLLATGG--GGGDRTIKFWN
   WD 6  339-378    -G---------------ACLNSVDT-G-SQVCSLLWSKNERELL---SSHGFTQNQLTLWK
   WD 7  382-420    -M---------------VKMAELTG-HTSRVLYMAQSPDGCTVA---S--AAGDETLRFWN

   WD40 Template    TG---------------ECLRTLSG-HTSGVTSVSFSPDGKRLV---S--GSEDGTIKVWD