Accession: AT4G31160.1 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT4G31160.1 (Len=1883)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G31160.1, Len=1883):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGQEHAEVPNSMVEDDQSVVAAEAIAELANSTGEPNPEEGEEQSVEDELIAKAQKLMEDITSVANNPNPNILHALSQLL 80  
WD40-rpts                                                                                      

Query       81 ESQESLFLEENGHFSNARGSHNSGKLCILIRENDEFFELISSTFLSENSYSTAVKAASARLLMNCSLTWMYPHVFDDAVT 160 
WD40-rpts                                                                                      

Query      161 ENFKNWVMEEAVKFPGEDSAKKEASDFEMLKTYSTGLLALSLASRGQIVEDVLTSGLSAKLMHYLRVRVLKEPSTSRIHT 240 
WD40-rpts                                                                                      

Query      241 TETKHVSLKTKEEGRSRVRKIVDTVEGDHVLETDSGREMGQTDVQPDGEFEIDGRDVFNVSGVVDCKIKPGDDNSVRDDP 320 
WD40-rpts                                                                                      

Query      321 SRHRLNRSKSRGRGRVHEGAPDTEVLLASPRLGRLLVRDRDLSKISDGRNAEDVTVCLGKMKSGIMEIEREDNDECFQGC 400 
WD40-rpts                                                                                      

Query      401 IIGTKNITDLVKRAVGAAETEARAAHAPDDAAKAAGDAAAELVKTAALEEFKSSGSEEAAVSAATRAAITVIDAAEVSRN 480 
WD40-rpts                                                                                      

Query      481 PTCVTSDQTTDVSEVSLPDIESLAQLQEKYCIQCLEILGEYVEVLGPVLHEKGVDVCIVLLERTSQLDDRSTVSPLLPDV 560 
WD40-rpts                                                                                      

Query      561 MKLICALAAHRKFAAMFVERRGILKLLAVPRVSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQD 640 
WD40-rpts                                                                                      

Query      641 QARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVRTGANTDRSAPEVMTSSEKQMAFHTCFALRQYFRAHLL 720 
WD40-rpts                                                                                      

Query      721 LLVDSIRPSRISRGGVPSSMKPNIRAAYKPLDISNEAVDAIFLQLQKDRRLGPTFVKAQWPAVNNFLASSGHVTMLELCQ 800 
WD40-rpts                                                                                      

Query      801 TPPVDRYLHDLLQYAFGVLHIVTSIPDGRKAIAHATLSNNRAGIAVILDAANISNSIVDPEIIQPALNVLINLVCPPPSL 880 
WD40-rpts                                                                                      

Query      881 SNKPPLAQNHQPVPGQATTRPSTDVAVGTQSTGNAPQTPVAPASSGLVGDRRIFLGAGTGSAGLAAKLEQVYRQAREAVR 960 
WD40-rpts                                                                                      

Query      961 GNDGIKILLKLLQPRIYVNPPATPDCLRALACRVLLGLARDDTIAQILTKLEVGKSLSELIRDSGGQSSGTDQGRWQAEL 1040
WD40-rpts                                                                                      

Query     1041 AQVALELIGIVTNSGHATTLTASDAATPTLRRIERAAIAAATPITYDSKELLLLIHEHLQASGLGDTASALLKEAQLTPL 1120
WD40-rpts                                                                                      

Query     1121 PSSASPSSIAYSTTQEMSTPLAQEQWPSGRANSGFFTSKPKVCAHDEDPNSRSNAALSAKKKHLASSTLEMPTPVAQQQW 1200
WD40-rpts                                                                                      

Query     1201 PSGRANCGFCPSIPKINARDEDPSSRGNAAPSAKKKQLTFSPSFSSQSRKQSFSHDALPQSTQRINCCSNSDPALADTSE 1280
WD40-rpts                                                                                      

Query     1281 TAAELVLKNDLDADAQFKTPISFPRKRKLSELRDSSVPGKRIDLGERRNSTFADGSGLQTPASALDANQSGSSRLGQMTP 1360
WD40-rpts                                                                                      

Query     1361 ASQLRLPSDPQPSNPERLSLDSLVVQYLKHQHRQCLAPITTLPPVSLLHPHVCPEPKRLLEAPLNMTGRLGTRELQSFYS 1440
WD40-rpts                                                                                 (____

Query     1441 GVHGNRRDRQFVFSRFKSWRSFRDETALFTCIALLGGTNHIAVGSHAGEIKIFEASSGSMLESVSGHQAPVTLVQPYVSR 1520
WD40-rpts      _______________________WD 1__________________________)   (_________________WD 2_

Query     1521 DTQLLLSSSSSDVQLWDASSITGGPRHSFDGCKAAKFSNSGLQFAALSCEASRKDVLLYDVQTCSPCQKLTDTVTSSRSN 1600
WD40-rpts      ________________)(___________________WD 3__________________)                    

Query     1601 PYSLVHFSPCDTLILWNGVLWDRRIPEKVRRFDQFTDYGGGGFHPSRNEVIINSEIWDMRTFKLLRSVPSLDQTAITFNS 1680
WD40-rpts                                                                                      

Query     1681 RGDVIYAMLRRNIEDVMSAVHTRRVKHPLFAAFRTLDAINYSDIATIPVDRCLLDFATEPTDSFLGLITMEDQEDMFSSA 1760
WD40-rpts                                                                                      

Query     1761 RMYEIGRRRPTDDDSDPDDDDETEDEDEDDEEEDDLDRILGLAGDNSDSGDDDLSSEDNEDSVSDFDEEADILIDGDFME 1840
WD40-rpts                                                                                      

Query     1841 ELIEGENEDDGNGEDEDDDDDGEMQDFMSSGEEDDYRDNIRSS 1883
WD40-rpts

3 WD40-repeats found in QUERY=AT4G31160.1 (Len=1883):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6  1436-1494     4.38  295.59  0.00645       20.0%     48.11
  WD 2:  Seg  9  1498-1537     5.82  355.19  0.00102       30.0%     50.78
  WD 3:  Seg 13  1538-1580     4.70  308.80  0.00428       15.0%     33.28

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1436-1494   QSFYSGVHGNRRDRQFVFSRFKSWRSFRDETALFTCI-ALLGGTNHIAVGSHAGE---IKIFE
   WD 2 1498-1537   -G-------------------SMLESVSGHQAPVTLVQPYVSRDTQLLLSSSSSD---VQLWD
   WD 3 1538-1580   AS-------------------SITGGPRHSFDGCKAA-KFSNSGLQFAALSCEASRKDVLLYD

   WD40 Template    TG-------------------ECLRTLSGHTSGVTSV-SFSPDGKRLVSGSEDGT---IKVWD