Input parameters:

  Query = AT4G30840.1 (Len=361)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G30840.1, Len=361):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEMMQDSFQVHRIPQSKYVDGVRWLPQASALNRFFATASYDADCDSSSIEIQSLDPNPRGNHNTNPLIESLSSWTSPSRV 80  
WD40-rpts                                                                                      

Query       81 SSLEVAGNGGGGGSFKPMVSAATSSGSLHVLMIDLVEGAAIEEFYAAEGERFHVGRVEGVDWREGGECVTVGEDGRVNVV 160 
WD40-rpts                                                   (_______________WD 1_______________

Query      161 KIVNGEGLRYRKVFDGNGLVAYRAVKWASPTEFVTGGYGFGLQLWDQRKSGEAVSQLKGNWFQGKTSAIVHSIDIHPSRK 240 
WD40-rpts      )             (_____________WD 2_____________)(______________________WD 3_______

Query      241 HTCIAGGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWEVQYDSYTKSNVSSSRILPVMTCSEDGILGIIEQG 320 
WD40-rpts      _______________)          (_______________________WD 4_______________________)  

Query      321 EEPIELLAEPCAINSFDIDRQNPQDVICSLEWESIAVFSRP 361 
WD40-rpts                                               

4 WD40-repeats found in QUERY=AT4G30840.1 (Len=361):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   126-161      3.80  271.63  0.01352       25.0%     35.90
  WD 2:  Seg 14   175-206      3.19  246.31  0.02944       15.0%     44.06
  WD 3:  Seg 17   207-256      5.18  328.61  0.00232       22.5%     48.81
  WD 4:  Seg 22   267-318      3.05  240.76  0.03489       22.5%     37.59

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  126-161    AA---E------------GERFHVGRVEGVDWREGGE----------CVTVGEDGRVNVVK
   WD 2  175-206    DG-------------------NGLVAYRAVKWASPT----------EFVTGGYGFGLQLWD
   WD 3  207-256    QR---KSGEAVSQLKGNWFQGKTSAIVHSIDIHPSRK--------HTCIAGGSSGTVFAWD
   WD 4  267-318    SGVGASE---------NINNPLSESEVWEVQYDSYTKSNVSSSRILPVMTCSEDGILGIIE

   WD40 Template    TG---EC---------LRTLSGHTSGVTSVSFSPDGK---------RLVSGSEDGTIKVWD