Input parameters:

  Query = AT4G30510.2 (Len=248)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G30510.2, Len=248):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLRELNFLTSILAVRMNKKRLVVVLLEKTFVYDLNTLVMLDTIDTVP 80  
WD40-rpts                                                                           (__________

Query       81 NPKGLSAFSPSLEGCYLAVPASTTKGSVLVYNVMDLQSHSEIDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSEAT 160 
WD40-rpts      _________WD 1__________________)   (_________________WD 2_________________)(____

Query      161 KSYSFRRGTYPSTIYSLSFGPSTQLPDILIATSSSGSIHAFSLSLAINQRSKRSTSFLGSVLPDSVSDALDPAHHHVLQN 240 
WD40-rpts      _________________WD 3____________________)                                      

Query      241 AVSSGIRR 248 
WD40-rpts              

3 WD40-repeats found in QUERY=AT4G30510.2 (Len=248):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7    70-112      4.59  304.46  0.00490       17.5%     33.31
  WD 2:  Seg 11   116-155      7.50  424.39  0.00012       27.5%     54.63
  WD 3:  Seg 15   156-202      5.06  323.63  0.00271       27.5%     47.08

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   70-112    -LVMLDTIDT----VPNPKGLSAFSPSLEGCYLA---VPASTTKGS-VLVYN
   WD 2  116-155    -LQSHSEIDA----HRSPLAAIALSSNGM----Y---IATGSEQGTLIRVHL
   WD 3  156-202    VSEATKSYSFRRGTYPSTIYSLSFGPSTQ----LPDILIATSSSGS-IHAFS

   WD40 Template    TGECLRTLSG----HTSGVTSVSFSPDGK----R---LVSGSEDGT-IKVWD