Input parameters:

  Query = AT4G30510.1 (Len=312)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G30510.1, Len=312):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLRELNFLTSILAVRMNKKRLVVVLLEKTFVYDLNTLVMLDTIDTVP 80  
WD40-rpts                                                                           (__________

Query       81 NPKGLSAFSPSLEGCYLAVPASTTKGSVLVYNVMDLQSHSEIDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSEAT 160 
WD40-rpts      _________WD 1__________________)   (_________________WD 2_________________)(____

Query      161 KSYSFRRGTYPSTIYSLSFGPSTQLPDILIATSSSGSIHAFSLSLAINQRSKRSTSFLGSVLPDSVSDALDPAHHHVLQN 240 
WD40-rpts      _________________WD 3____________________)(__________________WD 4_______________

Query      241 AVSSGIRSYAVVRKIDKLEGTSSPSHFTSLRATVSVITYNGYFQEYTLSINNKNESLWTLEREFNLFSITTG 312 
WD40-rpts      __)                                                                     

4 WD40-repeats found in QUERY=AT4G30510.1 (Len=312):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7    70-112      3.75  269.51  0.01444       17.5%     31.77
  WD 2:  Seg 11   116-155      7.34  417.87  0.00015       27.5%     53.87
  WD 3:  Seg 15   156-202      5.17  328.18  0.00235       27.5%     48.63
  WD 4:  Seg 19   203-243      3.07  241.28  0.03434       15.0%     -0.16

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   70-112    -LVMLDTID----TVPNPKGLSAFSPSLEG---CYLAVPASTTKGS-VLVYN
   WD 2  116-155    -LQSHSEID----AHRSPLAAIALSSNGMY---IA----TGSEQGTLIRVHL
   WD 3  156-202    VSEATKSYSFRRGTYPSTIYSLSFGPSTQLPDILI----ATSSSGS-IHAFS
   WD 4  203-243    LSLAINQRS---KRSTSFLGSVLPDSVSDA---LD----PAHHHVL-QNAVS

   WD40 Template    TGECLRTLS----GHTSGVTSVSFSPDGKR---LV----SGSEDGT-IKVWD