Input parameters:

  Query = AT4G29900.1 (Len=1069)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G29900.1, Len=1069):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGQFNNSPRGEDKDVEAGTSSFTEYEDSPFDIASTKNAPVERLRRWRQAALVLNASRRFRYTLDLKREEDKKQMLRKMR 80  
WD40-rpts                                                                                      

Query       81 AHAQAIRAAHLFKAAASRVTGIASPLPTPGGGDFGIGQEQIVSISRDQNIGALQELGGVRGLSDLLKTNLEKGIHGDDDD 160 
WD40-rpts                                                                                      

Query      161 ILKRKSAFGSNTYPQKKGRSFWRFVWEASQDLTLIILIVAAVASLALGIKTEGIEKGWYDGISIAFAVLLVIVVTATSDY 240 
WD40-rpts                                                                                      

Query      241 RQSLQFQNLNEEKRNIRLEVTRDGRRVEISIYDIVVGDVIPLNIGDQVPADGVLVAGHSLAVDESSMTGESKIVQKNSTK 320 
WD40-rpts                                                                                      

Query      321 HPFLMSGCKVADGNGTMLVTGVGVNTEWGLLMASVSEDNGGETPLQVRLNGVATFIGIVGLTVAGVVLFVLVVRYFTGHT 400 
WD40-rpts                                                                                      

Query      401 KNEQGGPQFIGGKTKFEHVLDDLVEIFTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTIC 480 
WD40-rpts                                                                                      

Query      481 SDKTGTLTLNEMTVVECYAGLQKMDSPDSSSKLPSAFTSILVEGIAHNTTGSVFRSESGEIQVSGSPTERAILNWAIKLG 560 
WD40-rpts                                                                                      

Query      561 MDFDALKSESSAVQFFPFNSEKKRGGVAVKSPDSSVHIHWKGAAEIVLGSCTHYMDESESFVDMSEDKMGGLKDAIDDMA 640 
WD40-rpts                                                                                      

Query      641 ARSLRCVAIAFRTFEADKIPTDEEQLSRWELPEDDLILLAIVGIKDPCRPGVKNSVLLCQQAGVKVRMVTGDNIQTAKAI 720 
WD40-rpts                                                                   (__________________

Query      721 ALECGILASDSDASEPNLIEGKVFRSYSEEERDRICEEISVMGRSSPNDKLLLVQSLKRRGHVVAVTGDGTNDAPALHEA 800 
WD40-rpts      __________WD 1____________________________)                                     

Query      801 DIGLAMGIQGTEVAKEKSDIIILDDNFESVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISAGEVPLTAVQLL 880 
WD40-rpts                                                                                      

Query      881 WVNLIMDTLGALALATEPPTDHLMDRAPVGRREPLITNIMWRNLFIQAMYQVTVLLILNFRGISILHLKSKPNAERVKNT 960 
WD40-rpts                                                                                      

Query      961 VIFNAFVICQVFNEFNARKPDEINIFRGVLRNHLFVGIISITIVLQVVIVEFLGTFASTTKLDWEMWLVCIGIGSISWPL 1040
WD40-rpts                                                                                      

Query     1041 AVIGKLIPVPETPVSQYFRINRWRRNSSG 1069
WD40-rpts                                   

1 WD40-repeats found in QUERY=AT4G29900.1 (Len=1069):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   702-763      3.55  261.50  0.01848       22.5%     19.82

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  702-763    AGVKVRMVTGDNIQTAKAIALECGILASDSDASEPNLIEGKVFRSYSEEERDRICEEISVMG

   WD40 Template    TGECLRTLSGHT----------SGVTSVSFSPDGKRLVSG----SED--------GTIKVWD