Input parameters:

  Query = AT4G29860.1 (Len=386)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G29860.1, Len=386):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKRPPPDPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHSRANGVLAVAASPWLGEDKIIS 80  
WD40-rpts           (_________________WD 1_________________)   (___________________WD 2________

Query       81 QGRDGTVKCWDIEDGGLSRDPLLILETCAYHFCKFSLVKKPKNSLQEAESHSRGCDEQDGGDTCNVQIADDSERSEEDSG 160 
WD40-rpts      __________)     (___________________WD 3__________________)         (___________

Query      161 LLQDKDHAEGTTFVAVVGEQPTEVEIWDLNTGDKIIQLPQSSPDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYED 240 
WD40-rpts      ______WD 4_________________)                (___________________WD 5____________

Query      241 GSILLWDIRNAKIPLTSVKFHSEPVLSLSVASSCDGGISGGADDKIVMYNLNHSTGSCTIRKEITLERPGVSGTSIRVDG 320 
WD40-rpts      ______)(___________________WD 6__________________)       (_________________WD 7_

Query      321 KIAATAGWDHRIRVYNYRKGNALAILKYHRATCNAVSYSPDCELMASASEDATVALWKLYPPHKSL 386 
WD40-rpts      _______________)   (_________________WD 8________________)        

8 WD40-repeats found in QUERY=AT4G29860.1 (Len=386):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-45      10.34  541.69  3.1e-06       37.5%     52.93
  WD 2:  Seg  5    49-91       7.61  429.05  0.00010       32.5%     55.69
  WD 3:  Seg  9    97-139      7.22  412.83  0.00017       10.0%     51.07
  WD 4:  Seg 14   149-188      6.02  363.22  0.00079       10.0%     37.59
  WD 5:  Seg 18   205-247      6.77  394.32  0.00030       25.0%     42.53
  WD 6:  Seg 21   248-290      8.34  459.31  4.0e-05       22.5%     53.33
  WD 7:  Seg 25   298-336      8.43  463.07  3.6e-05       22.5%     51.50
  WD 8:  Seg 29   340-378     10.04  529.34  4.6e-06       37.5%     52.64

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-45     PPD---P---VAVLRGHR--HSVMDVSFHP--SKS----LL-FTGSADGELRIWD
   WD 2   49-91     -HR---A---VSSAWAHSRANGVLAVAASPWLGED----KI-ISQGRDGTVKCWD
   WD 3   97-139    LSRDPLL---ILETCAYH--FCKFSLVKKP--KNS----LQ-EAESHSRGCDEQD
   WD 4  149-188    -AD---D---SERSEEDS--GLLQDKDHAE--GTT----FVAVVGEQPTEVEIWD
   WD 5  205-247    -ES---P---NASTKGRG--MCMAVQLFCP--PESQGFLHV-LAGYEDGSILLWD
   WD 6  248-290    IRN---AKIPLTSVKFHS--EPVLSLSVAS--SCD----GG-ISGGADDKIVMYN
   WD 7  298-336    -CT---I---RKEITLER--PGVSGTSIRV--DGK----IA-ATAGWDHRIRVYN
   WD 8  340-378    -GN---A---LAILKYHR--ATCNAVSYSP--DCE----LM-ASASEDATVALWK

   WD40 Template    TGE---C---LRTLSGHT--SGVTSVSFSP--DGK----RL-VSGSEDGTIKVWD