Input parameters:

  Query = AT4G29830.1 (Len=321)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G29830.1, Len=321):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLAGLKSIENAHEDSVWAATWVPATEDRPALLLTGSLDETVKLWRPDELDLVRTNTGHSLGVAALAAHPSGIIAASSSI 80  
WD40-rpts        (___________________WD 1___________________)   (_________________WD 2_________

Query       81 DSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVAGGSSASVKLWDTASWRLISTLSIPRPDAPKPSDKTSSKKF 160 
WD40-rpts      _______)   (_________________WD 3_________________)                (____________

Query      161 VLSVAWSPNGKRLACGSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLLGSMS 240 
WD40-rpts      _____WD 4________________)   (_________________WD 5_________________)   (_______

Query      241 GHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPGGTGVRAGRLASVSDDKSVSLYDY 320 
WD40-rpts      __________WD 6________________)   (____________________WD 7___________________) 

Query      321 S 321 
WD40-rpts       

7 WD40-repeats found in QUERY=AT4G29830.1 (Len=321):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-46       8.21  453.70  4.8e-05       25.0%     51.94
  WD 2:  Seg  5    50-88       9.75  517.37  6.6e-06       32.5%     56.19
  WD 3:  Seg  9    92-131      8.46  464.28  3.4e-05       27.5%     54.60
  WD 4:  Seg 14   148-186      9.27  497.51  1.2e-05       42.5%     37.05
  WD 5:  Seg 17   190-229      9.09  490.29  1.5e-05       42.5%     53.45
  WD 6:  Seg 21   233-271     10.78  559.98  1.8e-06       47.5%     56.59
  WD 7:  Seg 25   275-319      8.48  464.92  3.4e-05       37.5%     52.39

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-46     LAGLKSIENAHEDSVWAATWVP-ATE--DRPALLL-TGSLDETVKLWR
   WD 2   50-88     -LDLVRTNTGHSLGVAALAAHP-SGI------IAA-SSSIDSFVRVFD
   WD 3   92-131    -NATIAVLEAPPSEVWGMQFEP-KGT------ILAVAGGSSASVKLWD
   WD 4  148-186    -APKPSDKTSSKKFVLSVAWSP-NGK------RLA-CGSMDGTICVFD
   WD 5  190-229    -SKLLHQLEGHNMPVRSLVFSPVDPR------VLF-SGSDDGHVNMHD
   WD 6  233-271    -KTLLGSMSGHTSWVLSVDASP-DGG------AIA-TGSSDRTVRLWD
   WD 7  275-319    -RAAIQTMSNHNDQVWSVAFRP-PGGTGVRAGRLA-SVSDDKSVSLYD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGK------RLV-SGSEDGTIKVWD