Input parameters:

  Query = AT4G29380.1 (Len=1494)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G29380.1, Len=1494):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNKIARTTQVSATEYYLHDLPSSYNLVLKEVLGRGRFLKSIQCKHDEGLVVVKVYFKRGDSIDLREYERRLVKIKDVFL 80  
WD40-rpts                                                                                      

Query       81 SLEHPHVWPFQFWQETDKAAYLVRQYFYSNLHDRLSTRPFLSLVEKKWLAFQLLLAVKQCHEKDICHGDIKCENVLLTSW 160 
WD40-rpts                                                                                      

Query      161 NWLYLADFASFKPTYIPYDDPSDFSFFFDTRGQRLCYLAPERFYEHGGETQVAQDAPLKPSMDIFAVGCVIAELFLEGQP 240 
WD40-rpts                                                                                      

Query      241 LFELAQLLAYRRGQHDPSQHLEKIPDPGIRKMILHMIQLEPEARLSAEDYLQNYVGVVFPNYFSPFLHTLYCCWNPLPSD 320 
WD40-rpts                                                                                      

Query      321 MRVATCQGIFQEILKKMMENKSGDEIGVDSPVTSNPMNASTVQETFANHKLNSSKDLIRNTVNSKDEIFYSISDALKKNR 400 
WD40-rpts                                                                                      

Query      401 HPFLKKITMDDLGTLMSLYDSRSDTYGTPFLPVEGNMRCEGMVLIASMLCSCIRNIKLPHLRREAILLLRSCSLYIDDDD 480 
WD40-rpts                                                                                      

Query      481 RLQRVLPYVVALLSDPTAIVRCAAMETLCDILPLVRDFPPSDAKIFPEYIFPMLSMLPEDTEESVRICYASNIAKLALTA 560 
WD40-rpts                                                                                      

Query      561 YGFLIHSFQLSDVGVLNELNSQQISTTPASETPSHLQKANGNAQLQQLRKTIAEVVQELVMGPKQTPNVRRALLQDIGEL 640 
WD40-rpts                                                                                      

Query      641 CFFFGQRQSNDFLLPILPAFLNDRDEQLRSVFFEKIVYVCFFVGQRSVEEYLLPYIDQALSDQTEAVIVNALECLSTLCK 720 
WD40-rpts                                                                                      

Query      721 SSFLRKRALLQMIECVYPLLCYPSQWVRRAVVTFIAASSECLGAVDSYAFIAPVIRSYLSRLPASIASEEGLLSCLKPPV 800 
WD40-rpts                                                                                      

Query      801 TREVVYRIFEKTRNPEFMAKQRKMWYSSSPQSKDWESVDLFDKDAGELNSVECRAEQKQSVEGKKQIKSASKQPEVQGKY 880 
WD40-rpts                                                                                      

Query      881 AEKDAKLRIPRNPRPNASNTVELRDPVYPEKLQFSGFMAPYVSGANSFIEPENIPLYSFSMDKRAATNPPVASESSLQMN 960 
WD40-rpts                                                                                      

Query      961 SLGMGSLSVPWMDSMSKSFNLASSVPVPKLISGSFHVGTNPKQFYRVVHEPESRENDQISSAISKFQDLGVSSSSKSASV 1040
WD40-rpts                                                                                      

Query     1041 TSEDASSPADLVGEPSLSRTSVPDSGWKPRGVLVAHLQEHRSAVNDIATSSDHSFFVSASDDSTVKVWDSRKLEKDISFR 1120
WD40-rpts                                        (_______________WD 1______________)           

Query     1121 SRLTYHLEGSRGMCTTMLRNSTQVVVGASDGVIHMFSIDHISRGLGNVVEKYSGIVDIKKKDVKEGALVSLLNYTADSLS 1200
WD40-rpts                                                                                      

Query     1201 GPMVMYSTQNCGIHLWDTRSDLDAWTLKANPEEGYVSSLVTSPCGNWFVSGSSRGVLTLWDLRFRVPVNSWQYPIICPIE 1280
WD40-rpts                       (___________________WD 2___________________)                   

Query     1281 KMCLCFLPPSVSVSTTMKPLIYVAAGCNEVSLWNAEGGSCHQVLRVANYENETDVSEFQWKLPSNKVNPKPNHRQNMSSK 1360
WD40-rpts                                                                                      

Query     1361 YRIEELNEPPPRLPGIRSLLPLPGGDLLTGGTDLKIRRWDYSSPERSYCICGPSLKGVGNDDFYELKTNTGVQFVQETKR 1440
WD40-rpts                                                                                      

Query     1441 RPLATKLTAKAVLAAAATDTAGCHRDSVQSLASVKLNQRLLISSSRDGAIKVWK 1494
WD40-rpts                                                            

2 WD40-repeats found in QUERY=AT4G29380.1 (Len=1494):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10  1075-1109     6.07  365.45  0.00074       37.5%     22.03
  WD 2:  Seg 18  1218-1261     3.95  277.96  0.01112       35.0%     38.64

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1075-1109   -----AH----LQEHRSAVNDIATSSDHSFFVSASDDSTVKVWD
   WD 2 1218-1261   TRSDLDAWTLKANPEEGYVSSLVTSPCGNWFVSGSSRGVLTLWD

   WD40 Template    TGECLRT----LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD