Input parameters:

  Query = AT4G28450.1 (Len=452)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G28450.1, Len=452):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKIKTLSRSVDEYTRERSQDLQRVFHNFDPSLRPMEKAVEYQRALTAAKLEKIFARPFVGAMDGHRDGVSCMAKNPNYLK 80  
WD40-rpts      (_______________________WD 1_______________________)   (_________________WD 2___

Query       81 GIFSASMDGDIRLWDISSRRTVCQFPGHQGAVRGLTASTDGNVLVSCGTDCTVRLWNVPRPSLEDSSISSENFIEPSATY 160 
WD40-rpts      ______________)   (_________________WD 3________________)                     (_

Query      161 VWKNAFWAVDHQFEGDLFATAGAQLDIWNHNRSQPVQSFQWGTDSVISVRFNPGEPNLLATSASDRSITIYDLRLSSAAR 240 
WD40-rpts      ____________WD 4____________)   (_________________WD 5_________________)   (____

Query      241 KIIMMTKTNSIAWNPMEPMNLTAANEDGSCYSFDGRKLDEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRSVRIFPYNG 320 
WD40-rpts      _____________WD 6________________)    (_________________WD 7________________)   

Query      321 GHSREIYHTKRMQRVFCVKYSCDATYVISGSDDTNLRLWKAKASEQLGVILPREQKKHEYNEAVKNRYKHLSEVKRIVRH 400 
WD40-rpts      (_________________WD 8_________________)   (_________________WD 9_______________

Query      401 RHLPKPIYKAMGIIRTVNDSKRRKEARRKAHSAPGTVVTAPLRKRKIIKEVE 452 
WD40-rpts      _)                                                  

9 WD40-repeats found in QUERY=AT4G28450.1 (Len=452):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-52       5.01  321.72  0.00287       12.5%     44.17
  WD 2:  Seg  5    56-95       8.36  460.09  3.9e-05       32.5%     53.13
  WD 3:  Seg  9    99-137      9.24  496.24  1.3e-05       30.0%     55.97
  WD 4:  Seg 14   159-189      3.41  255.40  0.02229       10.0%     38.49
  WD 5:  Seg 17   193-232      7.69  432.12  9.3e-05       25.0%     54.74
  WD 6:  Seg 21   236-274      5.80  354.23  0.00105       22.5%     53.31
  WD 7:  Seg 25   279-317      9.19  494.11  1.4e-05       30.0%     45.82
  WD 8:  Seg 28   321-360      7.58  427.66  0.00011       25.0%     54.52
  WD 9:  Seg 32   364-402      6.02  363.51  0.00079        5.0%     39.87

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-52     MKIKTLSR-SVDEYTRERSQDLQRVFHNFDPSLRP-ME-KAVEYQRALTAAKLEK
   WD 2   56-95     -RPFVGAM-DG------------HRDGVSCMAKNP-NYLKGIFSASMDGDIRLWD
   WD 3   99-137    -RRTVCQF-PG------------HQGAVRGLTAST-DG-NVLVSCGTDCTVRLWN
   WD 4  159-189    T--------YV------------WKNAFWAVDHQF-EG-DLFATAG--AQLDIWN
   WD 5  193-232    -SQPVQSF-QW------------GTDSVISVRFNPGEP-NLLATSASDRSITIYD
   WD 6  236-274    -SSAARKI-IM------------MTK-TNSIAWNPMEP-MNLTAANEDGSCYSFD
   WD 7  279-317    -DEAKCVH-KD------------HVSAVMDIDFSP-TG-REFVTGSYDRSVRIFP
   WD 8  321-360    -GHSREIYHTK------------RMQRVFCVKYSC-DA-TYVISGSDDTNLRLWK
   WD 9  364-402    -SEQLGVI-LP------------REQKKHEYNEAV-KN-RYKHLSEVKRIVRHRH

   WD40 Template    TGECLRTL-SG------------HTSGVTSVSFSP-DG-KRLVSGSEDGTIKVWD