Input parameters:

  Query = AT4G25440.1 (Len=430)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G25440.1, Len=430):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLDMNGGNKRVFQRLGGGSNRPTTDSNQKVCFHWRAGRCNRYPCPYLHRELPGPGSGPVAASSNKRVADESGFAGPSHR 80  
WD40-rpts      (_______________WD 1_______________)                                 (__________

Query       81 RGPGFSGTANNWGRFGGNRTVTKTEKLCKFWVDGNCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLY 160 
WD40-rpts      _________________WD 2___________________________)___________________WD 3________

Query      161 TASKDETVRIWDCASGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQNNADLSLNGPVGQVYSLVVGTDLLFAGT 240 
WD40-rpts      ___________)   (_______________WD 4______________)  (________________WD 5_______

Query      241 QDGSILVWRYNSTTSCFDPAASLLGHTLAVVSLYVGANRLYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSLICWDQFL 320 
WD40-rpts      ________)       (________________WD 6_______________)   (________________WD 7___

Query      321 LSCSLDNTVKIWAATEGGNLEVTYTHKEEYGVLALCGVHDAEAKPVLLCSCNDNSLHLYDLPSFTERGKILAKQEIRSIQ 400 
WD40-rpts      ____________)   (___________________WD 8___________________)   (________________

Query      401 IGPGGIFFTGDGSGQVKVWKWSTESTPILS 430 
WD40-rpts      WD 9_______________)          

9 WD40-repeats found in QUERY=AT4G25440.1 (Len=430):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       3.71  267.91  0.01517       12.5%     10.49
  WD 2:  Seg  4    70-129      3.91  276.15  0.01176       15.0%     24.36
  WD 3:  Seg  7   129-172      9.57  509.85  8.4e-06       30.0%     56.26
  WD 4:  Seg 11   176-210      5.15  327.34  0.00241       20.0%     44.65
  WD 5:  Seg 15   213-249      6.94  401.36  0.00024       30.0%     51.93
  WD 6:  Seg 19   257-293      7.33  417.32  0.00015       37.5%     45.37
  WD 7:  Seg 23   297-333      7.76  435.10  8.5e-05       37.5%     45.01
  WD 8:  Seg 26   337-380      6.85  397.79  0.00027       15.0%     54.12
  WD 9:  Seg 30   384-420      5.95  360.40  0.00086       20.0%     52.90

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     MD----------------------------LDMNGGNKRVFQ-RL-----GGGSNRPTTDSNQKVCFHWR
   WD 2   70-129    DE----SGFAGPSHRRGPGFSGTANNWGRFGGNRTVTKTEKLCKF-----WVDGN-CPYGDKCRYLHCWS
   WD 3  129-172    SKGDSFS---------------------LLTQLDGHQKVVTGIAL-----PSGSDKLYTASKDETVRIWD
   WD 4  176-210    -G----Q---------------------CTGVLNLGGE---VGCI-----ISEGPWLLVGM-PNLVKAWN
   WD 5  213-249    -N----N---------------------ADLSLNGPVGQVYSLVV-----GTD--LLFAGTQDGSILVWR
   WD 6  257-293    -F----D---------------------PAASLLGHTLAVVSLYV-----GAN--RLYSGAMDNSIKVWS
   WD 7  297-333    -L----Q---------------------CIQTLTEHTSVVMSLIC-----WDQ--FLLSCSLDNTVKIWA
   WD 8  337-380    -G----G---------------------NLEVTYTHKEEYGVLALCGVHDAEAKPVLLCSCNDNSLHLYD
   WD 9  384-420    -F----T---------------------ERGKILAKQE-IRSIQI-----GPGG-IFFTGDGSGQVKVWK

   WD40 Template    TG----E---------------------CLRTLSGHTSGVTSVSF-----SPDGKRLVSGSEDGTIKVWD