Input parameters:

  Query = AT4G23640.1 (Len=775)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G23640.1, Len=775):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADRRNRCNQILLLAYQSFGLVFGDLSISPLYVYKCTFYGGLRHHQTEDTIFGAFSLIFWTITLLSLIKYMVFVLSADDN 80  
WD40-rpts                                                                                      

Query       81 GEGGIFALYALLCRHARFSLLPNQQAADEEISTYYGPGDASRNLPSSAFKSLIERNKRSKTALLVLVLVGTSMVITIGVL 160 
WD40-rpts                                                                                      

Query      161 TPAISVSSSIDGLVAKTSLKHSTVVMIACALLVGLFVLQHRGTNKVAFLFAPIMILWLLIIATAGVYNIVTWNPSVYKAL 240 
WD40-rpts                                                                                      

Query      241 SPYYIYVFFRDTGIDGWLSLGGILLCITGTEAIFAELGQFTATSIRFAFCCVVYPCLVLQYMGQAAFLSKNFSALPSSFY 320 
WD40-rpts                          (____________________________________________________WD 1___

Query      321 SSIPDPFFWPVLMMAMLAAMVASQAVIFATFSIVKQCYALGCFPRVKIVHKPRWVLGQIYIPEINWVVMILTLAVTICFR 400 
WD40-rpts      _________________________________________________)                              

Query      401 DTRHIAFAFGLACMTLAFVTTWLMPLIINFVWNRNIVFSVLFILFFGTIELIFVASALVKIPKGGWITLLLSLFFTFITY 480 
WD40-rpts                                                                                      

Query      481 VWHYGSRKKYLCDQHNKVPMKSILSLGPSLGIIKVPGMGLIYTELASGVPATFKHFLTNLPAFYQVVVFVCCKTVPIPYV 560 
WD40-rpts                                                                                      

Query      561 PQKERYLIGRIGPKTYRMYRCIIRAGYKDVNKDGDDFEDELVMSIAEFIQLESEGYGGSNTDRSIDGRLAVVKASNKFGT 640 
WD40-rpts                                                                                      

Query      641 RLSRSISEANIAGSSRSQTTVTNSKSPALLKLRAEYEQELPRLSMRRMFQFRPMDTKFRQPQVKEELFDLVNAKDAEVAY 720 
WD40-rpts                                                                                      

Query      721 IVGHGHVKAKRNSVFVKQLVVNVAYSFLRKNCRSPGVMLNIPHICLIKVGMNYYL 775 
WD40-rpts                                                             

1 WD40-repeats found in QUERY=AT4G23640.1 (Len=775):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   261-370      2.81  230.84  0.04716       17.5%     26.98

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  261-370    GGILLCITGTEAIFAELGQFTATSIRFAFCCVVYPCLVLQYMGQAAFLSKNFSALPSSFYSSIPDPFFWPVLMMAMLAAMVASQAVIFATFSIVKQCYALGCFPRVKIVH

   WD40 Template    TGECLRTLS--------GHTS----------------------------------GVTSVSFSPDG-----------------KRLVSG-----------SEDGTIKVWD