Input parameters:

  Query = AT4G21520.1 (Len=425)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G21520.1, Len=425):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEEEAVAEENGGLKVESGEQKSSWPTMRFDVSPYRTHHFSKQFRTARNPNNFLKGLKWSPDGSCFLASSEDNTLSLFHL 80  
WD40-rpts      (____________WD 1___________)           (_________________WD 2________________) 

Query       81 PQDGGDSNGYGVPVPEEDSYGASLLVNEGESVYDFCWYPYMSVSDPLTCVFATSTRDHPIHLWDSTSGELRCTYRAYDAM 160 
WD40-rpts                                (________________WD 3________________)   (____________

Query      161 DEITAAFSVGFNPDGTKIFAGYNSSIRVFDLHRPGRDFRQYSTLQKNKEGQAGILSTLAFSPTNSGMLAVGSYGQTTGIY 240 
WD40-rpts      _______WD 4__________________)           (_________________WD 5_________________

Query      241 REDNMELLYVLHGQEGGVTHVQFSKDGNYLYTGGRKDPYILCWDIRKSVEIVYKLYRATENTNQRVFFDIEPCGRHLGTG 320 
WD40-rpts      )   (_________________WD 6_________________)       (_________________WD 7_______

Query      321 GQDGLVHMYDLQTGNWVSGYQAASDTVNAFSFHPYLPMAATSSGHRRFAIPDDDDGEDKNELQLKADENCVSLWSFYVED 400 
WD40-rpts      _________)   (_________________WD 8________________)   (__________________WD 9__

Query      401 NTYDENNGVASESHLQNVTEEIVLT 425 
WD40-rpts      _______________)         

9 WD40-repeats found in QUERY=AT4G21520.1 (Len=425):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-29       5.13  326.41  0.00248       15.0%     38.73
  WD 2:  Seg  4    41-79       9.20  494.69  1.3e-05       25.0%     53.32
  WD 3:  Seg  9   107-144      6.05  364.48  0.00076       12.5%     34.12
  WD 4:  Seg 13   148-190      6.92  400.51  0.00025       32.5%     52.61
  WD 5:  Seg 17   202-241      6.92  400.32  0.00025       20.0%     46.65
  WD 6:  Seg 20   245-284      8.85  480.03  2.1e-05       45.0%     57.21
  WD 7:  Seg 24   292-330      8.26  456.04  4.4e-05       22.5%     49.20
  WD 8:  Seg 28   334-372      8.44  463.19  3.6e-05       17.5%     46.60
  WD 9:  Seg 31   376-416      5.50  341.76  0.00154       15.0%     25.89

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-29     MGE------------------EEAVAEEN-GGLKVESGE-QKSSWPTMR
   WD 2   41-79     -SKQFRTARNP-----N--NFLKGLKWSP-DGSCFLASS-EDNTLSLFH
   WD 3  107-144    NEG--ESVYDF-----C--WYPYMSVSDP-LTCVFATST-RDHPIHLWD
   WD 4  148-190    -GELRCTYRAYDAMDEI--TAAFSVGFNP-DGTKIFAGY--NSSIRVFD
   WD 5  202-241    -STLQKNKEGQ-----A--GILSTLAFSPTNSGMLAVGS-YGQTTGIYR
   WD 6  245-284    -MELLYVLHGQ-----E--GGVTHVQFSK-DGNYLYTGGRKDPYILCWD
   WD 7  292-330    -VYKLYRATEN-----T--NQRVFFDIEP-CGRHLGTGG-QDGLVHMYD
   WD 8  334-372    -GNWVSGYQAA-----S--DTVNAFSFHP-YLPMAATSS-GHRRFAIPD
   WD 9  376-416    -GEDKNELQLK-----ADENCVSLWSFYV-EDNTYDENN-GVASESHLQ

   WD40 Template    TGECLRTLSGH-----T--SGVTSVSFSP-DGKRLVSGS-EDGTIKVWD