Input parameters:

  Query = AT4G19860.1 (Len=535)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G19860.1, Len=535):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLLLEEIIRSVEALLKLRNRNQEPYVDPNLNPVLLVPGIAGSILNAVDHENGNEERVWVRIFGADHEFRTKMWSRFDPS 80  
WD40-rpts                                                                                      

Query       81 TGKTISLDPKTSIVVPQDRAGLHAIDVLDPDMIVGRESVYYFHEMIVEMIGWGFEEGKTLFGFGYDFRQSNRLQETLDQF 160 
WD40-rpts                                                                                      

Query      161 AKKLETVYKASGEKKINVISHSMGGLLVKCFMGLHSDIFEKYVQNWIAIAAPFRGAPGYITSTLLNGMSFVNGWEQNFFV 240 
WD40-rpts                (_________________________________________WD 1________________________

Query      241 SKWSMHQLLIECPSIYELMCCPYFKWELPPVLELWREKESNDGVGTSYVVLESYCSLESLEVFTKSLSNNTADYCGESID 320 
WD40-rpts      ________________)                                                               

Query      321 LPFNWKIMEWAHKTKQVLASAKLPPKVKFYNIYGTNLETPHSVCYGNEKMPVKDLTNLRYFQPTYICVDGDGTVPMESAM 400 
WD40-rpts                                                                                      

Query      401 ADGLEAVARVGVPGEHRGILNDHRVFRMLKKWLNVGEPDPFYNPVNDYVILPTTYEFEKFHENGLEVASVKESWDIISDD 480 
WD40-rpts                                                                                      

Query      481 NNIGTTGSTVNSISVSQPGDDQNPQAEARATLTVQPQSDGRQHVELNAVSVSVDA 535 
WD40-rpts                                                             

1 WD40-repeats found in QUERY=AT4G19860.1 (Len=535):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   171-257      3.23  248.27  0.02773       22.5%      4.99

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  171-257    SGEKKINVISHSMGGLLVKCFMGLHSDIFEKYVQNWIAIAAPFRGAPGYITSTLLNGMSFVNGWEQNFFVSKWSMHQLLIECPSIYE

   WD40 Template    TGECLRTLSGHTSG---------VTS------------VSFSPDG------------KRLVSGSE-----D---------GTIKVWD