Input parameters:

  Query = AT4G18905.1 (Len=494)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G18905.1, Len=494):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MITAVSWIPKGNLKAVPDVAEPPSKEELKELIESGAFARNVEGSNEDEEEEIEEDGEEISEVDHAKAVAEALGKSSKSKA 80  
WD40-rpts                                                                                      

Query       81 VSSSMEVDEVSQGLKELDMDNYDEEDDEIELFSSGMGDLYYPSNEMDPYLKDVDDEDDEEDIDDTTVKPTDSVIICARNE 160 
WD40-rpts                                              (_____________________WD 1______________

Query      161 DDVSHLEVYLYEESSGSPNMYVHHHIIIPEFPLCTAWLDCPLKGGEKGNFVAIGSKDTPTIEIWDLDVRDEVLPCIQLGG 240 
WD40-rpts      ______)                (__________________WD 2__________________)               

Query      241 IEEMIVSKKKKSKKQKPKFKEGSHTESVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYA 320 
WD40-rpts             (_____________________WD 3____________________)   (_________________WD 4_

Query      321 PEVLLSGSFDQTVVMKDGRQPSHSGFKWSVMSDVESLAWDPHCEHSFVVSLEDGTVKGFDIRAAQSGSDSDLNPTYTIQA 400 
WD40-rpts      ________________)   (_________________WD 5_________________)           (________

Query      401 HAQDRGVSSISYNISTPNLLATGSMDKSVKLWDLSNNEPSCIATHQPNAGAVFSISFAVDNPFLLAIGGSKGELHVWDTL 480 
WD40-rpts      __________WD 6__________________)(____________________WD 7___________________)  

Query      481 LDANVARKYGSNRS 494 
WD40-rpts                    

7 WD40-repeats found in QUERY=AT4G18905.1 (Len=494):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   121-167      4.85  315.11  0.00352        2.5%     32.72
  WD 2:  Seg  9   184-225      5.05  323.17  0.00274       22.5%     24.55
  WD 3:  Seg 13   248-294      7.35  418.15  0.00014       27.5%     42.51
  WD 4:  Seg 16   298-337      8.20  453.35  4.8e-05       35.0%     52.59
  WD 5:  Seg 20   341-380      6.91  400.01  0.00025       27.5%     51.93
  WD 6:  Seg 24   392-433      6.18  370.12  0.00064       32.5%     51.38
  WD 7:  Seg 28   434-478      7.59  428.28  0.00011       32.5%     57.96

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  121-167    YP----SNEM------DPYLKDVDDEDDE--EDI-DDTTVKP-TD-S-V-IICARNED-DVSHLE
   WD 2  184-225    HH----IIIP------E-------FPLCT--AWLDCPLKGGE-KG-N-F-VAIGSKDTPTIEIWD
   WD 3  248-294    KK----KKSKKQKPKFK-------EGSHT--ESV-LGLAWNK-EF-R-NILASASADK-KVKVWD
   WD 4  298-337    -G----TCKI------T-------MEHHT--KEV-QAVAWNH-YAPE-V-LLSGSFDQ-TVVMKD
   WD 5  341-380    -P----SHSG------F-------KWSVM--SDV-ESLAWDP-HC-E-HSFVVSLEDG-TVKGFD
   WD 6  392-433    -L----NPTY------T-------IQAHAQDRGV-SSISYNISTP-N-L-LATGSMDK-SVKLWD
   WD 7  434-478    LSNNEPSCIA------T-------HQPNA--GAV-FSISFAV-DN-PFL-LAIGGSKG-ELHVWD

   WD40 Template    TG----ECLR------T-------LSGHT--SGV-TSVSFSP-DG-K-R-LVSGSEDG-TIKVWD