Input parameters:

  Query = AT4G18360.1 (Len=368)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G18360.1, Len=368):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDVSTTVLGFNISMPIMIAPTAM 80  
WD40-rpts                                                                                      

Query       81 QKMAHPDGELATARATSAAGTIMTLSSWATCSVEEVASTGPGIRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTPR 160 
WD40-rpts                                                                                      

Query      161 LGRRESDIKNRFALPRGLTLKNFEGLDLGKIDKTNDSGLASYVAGQVDQSLSWKDIKWLQSITSLPILVKGVITAEDARI 240 
WD40-rpts                                                                   (__________________

Query      241 AVEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFLDGGVRRGTDVFKALALGASGVFVGRPSLFSLAADGE 320 
WD40-rpts      ___________WD 1____________________________)                                    

Query      321 AGVRKMLQMLRDEFELTMALSGCRSLREISRTHIKTDWDTPHYLSAKL 368 
WD40-rpts                                                      

1 WD40-repeats found in QUERY=AT4G18360.1 (Len=368):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   222-284      3.33  252.14  0.02463       20.0%     17.77

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  222-284    ITSLPILVKGVITAEDARIAVEYGAAGIIVSNHGARQLDYVPATIVALEEVVKAVEGRIPVFL

   WD40 Template    TGECLRTLSGHTS----------GVTSVSFSPDGKRLVSGSE-------------DGTIKVWD