Input parameters:

  Query = AT4G16630.1 (Len=789)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G16630.1, Len=789):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPSSFFFEDASDDELELIRNQEDSSEEDVKEGEAEEHEAGEDEDGEEEYEEEDDDEEEEDEKRKRDADAQSPWDFASYSS 80  
WD40-rpts                                                                                      

Query       81 SVGEEHARRHTTSIDEKISKAIQHRPVPISINEEEEEEEEEEDASDAETDKQEEYLSEDDEAAEYKPEDATPKPFFSTVD 160 
WD40-rpts                                                                                      

Query      161 GVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATR 240 
WD40-rpts                                                (_____________________________________

Query      241 VLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 320 
WD40-rpts      _______WD 1___________________________________________)                         

Query      321 EADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQE 400 
WD40-rpts                                                                                      

Query      401 AVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIG 480 
WD40-rpts                                                                                      

Query      481 VQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPEQSIVKWSQIIDEMEDQYS 560 
WD40-rpts                                                                                      

Query      561 AVISAERDERALRKAEMEFAKAENMLEHRDEIYARPKRTWFMTEKEKKLVAQAEKDSAGNPAGGELVSADRAEDLKMKEK 640 
WD40-rpts                                                                                      

Query      641 RKREREKNLPRKKRRKLEAAREMLEDNEGEEEEEDEEGDEKRGRSRGKDKKKQETDKKGLTLKDLGYMRAKAVKAKQRAI 720 
WD40-rpts                                                                                      

Query      721 DSGKMERPKPDKKQSRSKPRNQPRGEEMKDLFKSDMGEKKQGRGGAAAAAKPRTKSKNSFKSKARYKRR 789 
WD40-rpts                                                                           

1 WD40-repeats found in QUERY=AT4G16630.1 (Len=789):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   203-295      2.85  232.56  0.04478       25.0%     35.51

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  203-295    TGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVAT

   WD40 Template    TGECLRTLSGHTSG----------------------VTSVSFSPD--------------------GKRLVSGSED-----------GTIKVWD