Input parameters:

  Query = AT4G16070.1 (Len=654)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G16070.1, Len=654):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAGVMVTATGAVVILYLLSRRIVWARNGEDDSGGELGKSGRSGRRRIVRRPAQAPATWLETISTLSETLRFTYSETLGK 80  
WD40-rpts                                                                                      

Query       81 WPIADLAFGINYLMRRQGNFPTASVYAGSNCIELKGPEIIMDLTELLRFLTLCMLFSKKPFAVFLESAGYTHEDVLLQKP 160 
WD40-rpts                                                                                      

Query      161 KAGIMQPAFTIIRDTNSKCILLLIRGTHSIKDTLTAATGAVVPFHHSVLHDGGLSNLVLGYAHCGMVAAARWIAKLSVPC 240 
WD40-rpts                                                                                      

Query      241 LLKALDENPSFKVQIVGHSLGGGTASLLTYILREQKEFASATCFTFAPAACMTWDLAESGKHFITTIINGSDLVPTFSAS 320 
WD40-rpts             (_________________________________WD 1_________________________________) 

Query      321 SVDDLRSEVTSSSWSNDLRDQVEHTRVLSVVYRSATAIGSRLPSIASAKAKVAGAGAILRPVSSGTQVMLKRAQDVAQAV 400 
WD40-rpts                                                                                      

Query      401 VQTRSTLSSWSCIGPRRRAISSQLNSKVTDMPEASAIMAERRSTEALLAETVAIDRKGHKRTEHSSSSSSESDRDEPDEE 480 
WD40-rpts                                                                                      

Query      481 EEEEPLISIDQVIAETSSIEEDVTEGELWDELDRELTRQENERDSEAMEEEAAAAKEITEEETVITGGGDSSTGQNQSPV 560 
WD40-rpts                                                                                      

Query      561 SASSMDLIENQRFYPPGKIMHIVSVTETESETERDEVVVVGTTTVERVRIYETPRELYRKIRLSRTMINDHYMPMYKKMM 640 
WD40-rpts                                                                                      

Query      641 ELLITELECDSHSS 654 
WD40-rpts                    

1 WD40-repeats found in QUERY=AT4G16070.1 (Len=654):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   248-319      2.90  234.27  0.04251       15.0%     27.25

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  248-319    NPSFKVQIVGHSLGGGTASLLTYILREQKEFASATCFTFAPAACMTWDLAESGKHFITTIINGSDLVPTFSA

   WD40 Template    TGECLRTLSGHT-------------------SGVTSVSFSPDGKRL-------------VSGSEDGTIKVWD