Input parameters:

  Query = AT4G13940.3 (Len=440)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G13940.3, Len=440):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALLVEKTSSGREYKVKDMSQADFGRLELELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAE 80  
WD40-rpts                                                                                      

Query       81 VRWCSCNIFSTQDHAAAAIARDSAGVKAEEIFEKTGQVPDPTSTDNPEFQIVLSIIKEGLQVDPKKYHKMKERLVGVSEE 160 
WD40-rpts                                                                                      

Query      161 TTTGVKRLYQMQQNGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKTAG 240 
WD40-rpts                   (__________________________________WD 1____________________________

Query      241 ARVIVTEIDPICALQALMEGLQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPG 320 
WD40-rpts      ______)                                                                         

Query      321 VKRITIKPQTDRWVFPETKAGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKASGKYEKKVYVLPKHLDE 400 
WD40-rpts                                                                                      

Query      401 KVALLHLGKLGARLTKLSKDQSDYVSIPIEGPYKPPHYRY 440 
WD40-rpts                                              

1 WD40-repeats found in QUERY=AT4G13940.3 (Len=440):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   174-247      3.79  271.42  0.01361       22.5%     26.54

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  174-247    NGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKTAGARVIVTE

   WD40 Template    TGECLRTLSGHTSGVTSVSF--------S-------------PDGKRLVSGSEDGT-------------IKVWD