Input parameters:

  Query = AT4G12790.5 (Len=271)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G12790.5, Len=271):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGYAQLVIGPAGSGKSTYCSSLYEHCETIGRTMHVVNLDPAAEIFNYPVAMDIRELISLEDVMEDLKLGPNGALMYCMEY 80  
WD40-rpts      (__________________________________________________WD 1_________________________

Query       81 LEDSLHDWVDEELENYRDDDYLIFDCPGQIELFTHVPVLKNFVEHLKQKNFNVCVVYLLDSQFITDVTKFISGCMSSLAA 160 
WD40-rpts      ________________________)                                                       

Query      161 MIQLELPHVNILSKMDLLQDKSNIDDYLNPEPRTLLAELNKRMGPQYAKLNKALIEMVGEYGMVNFIPINLRKEKSIQYV 240 
WD40-rpts                                                                                      

Query      241 LSQIDVCIQFGEDADVNIKDDDDFSDDGPDL 271 
WD40-rpts                                     

1 WD40-repeats found in QUERY=AT4G12790.5 (Len=271):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-105      3.08  241.77  0.03383       27.5%     37.98

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-105    MGYAQLVIGPAGSGKSTYCSSLYEHCETIGRTMHVVNLDPAAEIFNYPVAMDIRELISLEDVMEDLKLGPNGALMYCMEYLEDSLHDWVDEELENYRDDDYLIFD

   WD40 Template    TGECLRTLSGHTSG------------------VTSVSFSP-----------DGKRLVS----------GSE--------------------------DGTIKVWD