Input parameters:

  Query = AT4G11920.1 (Len=475)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G11920.1, Len=475):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEDESTTPKKKSDSQLNLPPSMNRPTVSLESRINRLIDSNHYHSPSKPIYSDRFIPSRSGSNFALFDLASSSPNKKDGK 80  
WD40-rpts                                                                                      

Query       81 EDGAGSYASLLKTALFGPVTPEKSDVVNGFSPSGNIFRFKTETQRSLNLYPPFDSDVVSGVSPSPVKSPRKILRSPYKVL 160 
WD40-rpts                                                                                      

Query      161 DAPALQDDFYLNLVDWSAQNVLAVGLGNCVYLWNACSSKVTKLCDLGVDETVCSVGWALRGTHLAIGTSSGTVQIWDVLR 240 
WD40-rpts       (______________WD 1_____________)(___________________WD 2__________________)   

Query      241 CKNIRTMEGHRLRVGALAWSSSVLSSGSRDKSILQRDIRTQEDHVSKLKGHKSEICGLKWSSDNRELASGGNDNKLFVWN 320 
WD40-rpts      (________________WD 3_______________)    (_________________WD 4________________)

Query      321 QHSTQPVLRFCEHAAAVKAIAWSPHHFGLLASGGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYS 400 
WD40-rpts         (__________________WD 5__________________)   (_________________WD 6__________

Query      401 QNQIIVWKYPTMSKLATLTGHSYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQSRESEIGALSFGRTTIR 475 
WD40-rpts      _______)   (_________________WD 7________________)                         

7 WD40-repeats found in QUERY=AT4G11920.1 (Len=475):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   162-194      3.53  260.55  0.01902        2.5%     44.49
  WD 2:  Seg  6   195-237      7.28  415.45  0.00016       30.0%     53.98
  WD 3:  Seg 10   241-277      6.63  388.38  0.00036       32.5%     53.07
  WD 4:  Seg 14   282-320      9.03  487.82  1.7e-05       30.0%     48.45
  WD 5:  Seg 18   324-365      6.94  401.43  0.00024       22.5%     43.24
  WD 6:  Seg 22   369-408      5.04  323.01  0.00276       27.5%     46.64
  WD 7:  Seg 26   412-450      9.68  514.32  7.3e-06       37.5%     54.71

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  162-194    -------AP---ALQDDFYLNLVDWSAQNVLA---VGLGNCVYLWN
   WD 2  195-237    ACSSKVTKLCDLGVDETVCSVGWALRGTHLAI---GTSSGTVQIWD
   WD 3  241-277    -CKNIRTME---GHRLRVGALAWS--SSVLSS---GSRDKSILQRD
   WD 4  282-320    -EDHVSKLK---GHKSEICGLKWSSDNRELAS---GGNDNKLFVWN
   WD 5  324-365    -TQPVLRFC---EHAAAVKAIAWSPHHFGLLASGGGTADRCIRFWN
   WD 6  369-408    -NTHLNCVD---TN-SQVCNLVWSKNVNELVS-THGYSQNQIIVWK
   WD 7  412-450    -MSKLATLT---GHSYRVLYLAVSPDGQTIVT---GAGDETLRFWN

   WD40 Template    TGECLRTLS---GHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD