Input parameters:

  Query = AT4G11270.1 (Len=1446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G11270.1, Len=1446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKCRSVACLWSRAPPSHRVTATASLTNPPTLYTGGSDGSIIWWSISSSSESNSVTRLPHHEIKPIAMLCGHTSPIVDLAI 80  
WD40-rpts          (_________________WD 1_________________)                                    

Query       81 CDPTILSSNGVVASDNGNADPFVNCCALISACTDGVLCVWSRSSGQCRKRRKLPPWVGSPSILSTLPSEPRYVCVGCSYI 160 
WD40-rpts          (________________WD 2_______________)                                       

Query      161 DVDGAETLADTDFQKSRCTVVVVDTYTLTIVHTVFHGNLSIGCLNFMGVVQLDEQESLLMADSFGRLQLVSVSEKSEPSK 240 
WD40-rpts                                 (___________________WD 3___________________)(________

Query      241 GSLVSRNWLSEGEIAVSVITRGDLVAFFSKSRCVFWLLNREEAIGEISFVDDSHSSNFLFKEAMILYSSTSTIEGDKDDS 320 
WD40-rpts      ____________WD 4____________________)   (______________________WD 5_____________

Query      321 ISETFVLWDGSGSAVLFTMSYIDGEFTYKNFGEIVTAPDDKRSVKSTFCFVQLRQNLLRVESSCCDVEQPSQWRPHITIW 400 
WD40-rpts      ________)   (_________________WD 6________________)                             

Query      401 SLCLGNGKEKELQRKVLGESSYFADWISSSCLDPKGSVSAETGTSQSGSQCSAKNDLQSFVSDNGQCVSSSMVISENMYV 480 
WD40-rpts         (______________________WD 7_____________________)                            

Query      481 PYAVVYGFFSGEIEIAKFDFLHGIDSPASSPRSDTDPLVYKQRLLGHTGSVLCLAAHRMFGDANGCNSSHVLISGSMDCT 560 
WD40-rpts                                                   (_________________WD 8_____________

Query      561 IRIWDLESGNVIMIMHHHVAPVRQIILSPAPTKRPWSKCFLSVGDDSCVALSSLETLRVERMFPGHPNYPTKVVWDGTRG 640 
WD40-rpts      ____)   (____________________WD 9___________________)   (_____________________WD

Query      641 YIACLFRSLSRKSDPIDVLYIWDVKTGARERVLHGAASHSMFDHFCAGISEKSHSGTVLNGNTSVSSLLFPVDEERKPFY 720 
WD40-rpts      10____________________)   (____________________WD11___________________)   (_____

Query      721 LKNYERAASLSTSKPSSSQEKTREESSTASSFLQSIRYPSIKCTCPFPGISTLIFDLSSLAVYCQTHEDSDMHKMLEEKS 800 
WD40-rpts      ____________WD12________________)   (_________________WD13________________)     

Query      801 DKATAQQKTSKDKSPVQKTLDNHAEVVHMDKAIGEYLIRFSLSFLHLWGIDFELDQMLVAHLKLKRPESFIVTSGLQGDK 880 
WD40-rpts                                                                    (_______________WD

Query      881 GSLTLAFPGLNATLELWKSSSEFTALRSVIMVSLAQCMISLSHSTATYSSNLAAFYTRNLAEKYPDLKPPLLQLLVTFWQ 960 
WD40-rpts      14_______________)                                                              

Query      961 DNSEQVRMAARSLFHHTASLAIPLPLCSDHASEHAELVRSLSGISLNEPKVLSTGEEYPTNSLDSEHIHQAQRLSQAEES 1040
WD40-rpts                                                                                      

Query     1041 EILSWLESFEMQDWISCVGGTSQDAMAAHIIVAAALSIWYPSLVKPGLAMLVVHKLLNLVMAMSEKYSSTAAELLSEGME 1120
WD40-rpts                                                                                      

Query     1121 TTWKTWIGPDIPRIVSDIFFQIECVSSSVGAYQVVPSSIKETLVEVLLPSLAMADVLGFLSIIESQIWSTASDSPVHVVS 1200
WD40-rpts                                                                                      

Query     1201 LRTLIRIIRAAPRNLVLHLEKAVNFVLQTMDPSNTVMRKTCLQTSMATLREVVRVFPMVILNDSSTRLAIGDVITEINNA 1280
WD40-rpts                                                                                      

Query     1281 CIHIYDMRSMTKIRVLDASGPPGLPNFLRGASESAVTTAISALSFSPDGEGLVAFSENGLMIRWWSLGSVWWEKLSQSLT 1360
WD40-rpts                      (______________________WD15______________________)              

Query     1361 PIQCTKLIFIHPWDGFSSSSSRTSVISSISNDEQELPLQETAKNISHVERLKQLVQHLDLSYRLEWASERKVVLTRHNVE 1440
WD40-rpts                                                                                      

Query     1441 LGTCLL 1446
WD40-rpts            

15 WD40-repeats found in QUERY=AT4G11270.1 (Len=1446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-44       7.73  433.92  8.8e-05       25.0%     43.24
  WD 2:  Seg  6    85-121      4.33  293.66  0.00685       20.0%     22.31
  WD 3:  Seg 13   188-231      4.40  296.44  0.00628       10.0%     42.62
  WD 4:  Seg 17   232-277      4.31  292.75  0.00704       20.0%     40.93
  WD 5:  Seg 21   281-329      3.96  278.32  0.01100       20.0%     34.68
  WD 6:  Seg 25   333-371      5.01  321.47  0.00289       12.5%     24.76
  WD 7:  Seg 30   404-452      5.42  338.40  0.00171       15.0%     26.24
  WD 8:  Seg 39   526-565      6.27  373.55  0.00057       22.5%     24.74
  WD 9:  Seg 42   569-613      6.18  370.02  0.00064       20.0%     56.16
  WD10:  Seg 45   617-663      5.50  341.85  0.00154       17.5%     45.24
  WD11:  Seg 49   667-711      5.61  346.53  0.00133       17.5%     50.75
  WD12:  Seg 53   715-753      6.63  388.35  0.00036       10.0%     41.86
  WD13:  Seg 57   757-795      5.27  332.15  0.00208        5.0%     27.11
  WD14:  Seg 61   863-898      4.02  280.56  0.01026       17.5%     18.10
  WD15:  Seg 70  1297-1346     5.50  341.76  0.00154       37.5%     31.14

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-44     SV---------A-------CLWSR---------APPSHR------VTA------TAS-----LTN------PP-TLYTGGS-D--------G----SIIWWS
   WD 2   85-121    -------------------ILSSN---------GVVASD------NGN------ADP-----FVN------CC-ALISACT-D--------G----VLCVWS
   WD 3  188-231    -L---------T-------IVHTV---------FHGNLS------IGC------LNFMGVVQLDE------QE-SLLMADS-F--------G----RLQLVS
   WD 4  232-277    VS---------EKSEPSKGSLVSR---------NWLSEG------EIA------VSV-----ITR------GD-LVAFFSK-S--------R----CV-FWL
   WD 5  281-329    -E---------E-------AIGEI---------SFVDDS------HSSNFLFKEAMI-----LYS------ST-STIEGDK-D--------DSISETFVLWD
   WD 6  333-371    -S---------A-------VLFTM---------SYIDGE------FTY------KNF-----GEI------VT-APDDKRS-V--------K----STFCFV
   WD 7  404-452    LGNGKEKELQRK-------VLGES---------SYFADW------ISS------SCL-----DPK------GS-VSAETGT-S--------Q----SGSQCS
   WD 8  526-565    GH---------T-------GSVLC---------LAAHRM------FGD------ANG-----CNS------SH-VLISGSM-D--------C----TIRIWD
   WD 9  569-613    -G---------N-------VIMIM---------HHHVAP------VRQ------IIL-----SPAPTKRPWSK-CFLSVGD-D--------S----CVALSS
   WD10  617-663    -L---------R-------VERMF---------PGHPNY------PTK------VVW-----DGT------RG-YIACLFR-SLSRKSDPID----VLYIWD
   WD11  667-711    -G---------A-------RERVL---------HGAASHSMFDHFCAG------ISE-----KSH------SG-TVLNGNT-S--------V----SSLLFP
   WD12  715-753    -E---------R-------KPFYL---------KNYERA------ASL------STS-----KPS------SS-QEKTREE-S--------S----TASSFL
   WD13  757-795    -R---------Y-------PSIKC---------TCPFPG------IST------LIF-----DLS------SL-AVYCQTH-E--------D----SDMHKM
   WD14  863-898    ---------------------KLK---------RPESFI------VTS------GLQ-----GDK------GSLTLAFPGL-N--------A----TLELWK
   WD15 1297-1346   DA---------S-------GPPGLPNFLRGASESAVTTA------ISA------LSF-----SPD------GE-GLVAFSENG--------L----MIRWWS

   WD40 Template    TG---------E-------CLRTL---------SGHTSG------VTS------VSF-----SPD------GK-RLVSGSE-D--------G----TIKVWD