Input parameters:

  Query = AT4G11110.1 (Len=1036)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G11110.1, Len=1036):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMDEGSVGDVSRIDEADVAHLQFKNSEQSFKPENIEVREVKEVQVQREAGSPDCSYGVIADFLDGKNGGDHVELIGNEPC 80  
WD40-rpts                                                                                      

Query       81 SSRQNTNDEGDVVEELTVKTCEGSSMAIVGRPSSRARLEMNRSQFLHRFPLDGDLPGSSSMSKKVIDRGTVSILRNAGKM 160 
WD40-rpts                                                                                      

Query      161 SLPETSNGQLAIIAVNGEANEHLTNVERNPVPVEALSHEGIKTKMLSQSGFSQFFVRKTLKGKGVTFRGPPNNRSKARNM 240 
WD40-rpts                                                                                      

Query      241 DQQTVASSGSALVIANTSAKISSSIPLAAYDGLPCLPSNTSKPSSCANPSDTHRGCGGEGLSLREWLKSERQEVNKAECM 320 
WD40-rpts                                                                                      

Query      321 YIFRQIVDHVDCSHSQGVVLCDLRPSSFKIFKENAVKYVVSGSQRESFDSNMNKETLSQLENPLVRRRLGDTSSLSIPAK 400 
WD40-rpts                                                                                      

Query      401 KQKSSGPSSRQWPMFQRAGGVNIQTENNDGAIQEFHFRSSQPHCSTVACPFTSVSEQLEEKWYASPEELRGDMRSASSNI 480 
WD40-rpts                                                                                      

Query      481 YSLGILLYELLSQFQCERAREAAMSDIRHRILPPKFLSENPKEAGFCLWLLHPESSCRPSTRDILQSEVVNGIPDLYAEG 560 
WD40-rpts                                                                                      

Query      561 LSLSIEQEDTESELLQHFLFLSQEKRQKHAGNLMEEIASVEADIEEIVKRRCAIGPPSLEEASSSSPASSVPEMRLIRNI 640 
WD40-rpts                                                                                      

Query      641 NQLESAYFAARIDAHLPEARYRLRPDRDLLRNSDNTVAEVENSETWSSDDRVGAFFDGLCKYARYSKFETRGVLRTSELN 720 
WD40-rpts                                                                       (______________

Query      721 NTSNVICSLGFDRDEDYFATAGVSKKIKIYEFNSLFNESVDIHYPAIEMPNRSKLSGVCWNNYIRNYLASSDYDGIVKLW 800 
WD40-rpts      ______WD 1____________________)               (_______________WD 2______________

Query      801 DVTTGQAISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVKLWNINERNCLGTIRNIANVCCVQFSPQSSHLLAFGSSDF 880 
WD40-rpts      )   (_________________WD 3_________________)   (_________________WD 4___________

Query      881 RTYCYDLRNLRTPWCILSGHNKAVSYAKFLDNETLVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLST 960 
WD40-rpts      _____)    (________________WD 5________________)           (_________________WD 

Query      961 SDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCWRKRSNMVVSASSNGSIKVLQLV 1036
WD40-rpts      6________________)                 (_________________WD 7________________)  

7 WD40-repeats found in QUERY=AT4G11110.1 (Len=1036):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   706-751      6.45  381.24  0.00045       17.5%     46.58
  WD 2:  Seg 16   767-801      5.65  348.06  0.00127       22.5%     48.34
  WD 3:  Seg 19   805-844      8.14  450.93  5.2e-05       32.5%     54.15
  WD 4:  Seg 23   848-886      6.07  365.22  0.00074       32.5%     51.66
  WD 5:  Seg 26   891-928      7.45  422.32  0.00013       37.5%     42.38
  WD 6:  Seg 30   940-978      7.60  428.43  0.00010       25.0%     53.41
  WD 7:  Seg 34   996-1034     5.93  359.45  0.00089       25.0%     47.50

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  706-751    SKFETRGVLRTSELNNTSNVICSLGFDRDE-D-Y-FATAGVSKKIKIYE
   WD 2  767-801    ------------IEMPNRSKLSGVCWNNYI-RNY-LASSDYDGIVKLWD
   WD 3  805-844    -GQAIS------HFIEHEKRAWSVDFSEACPT-K-LASGSDDCSVKLWN
   WD 4  848-886    -RNCLG------TIRNIAN-VCCVQFSPQS-S-HLLAFGSSDFRTYCYD
   WD 5  891-928    -RTPWC------ILSGHNKAVSYAKFL-DN-E-T-LVTASTDNTLKLWD
   WD 6  940-978    -NACSL------TFGGHTNEKNFVGLSTSD-G-Y-IACGSETNEVYAYH
   WD 7  996-1034   -ISGKE------IEEDNNLFVSSVCWRKRS-N-M-VVSASSNGSIKVLQ

   WD40 Template    TGECLR------TLSGHTSGVTSVSFSPDG-K-R-LVSGSEDGTIKVWD