Input parameters:

  Query = AT4G11020.1 (Len=159)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G11020.1, Len=159):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNCLVGRNNENIAEEEEEKFEEVMKKDYKRKDRKLKIVLRRDELEKIILFQLNADGANKGGDAKLASFGVFLRELEAER 80  
WD40-rpts      (_________________________________________________________WD 1__________________

Query       81 LAGEAAAAVAKEEKSSRRLCRRWKPSLESVIEWPEEIVVNEIDENEEDNGAYNNDELNLGLNSQVLKMIYLSFIFCGQK 159 
WD40-rpts      _______________________________________)                                       

1 WD40-repeats found in QUERY=AT4G11020.1 (Len=159):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-120      3.27  249.88  0.02640       15.0%      1.43

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-120    MGNCLVGRNNENIAEEEEEKFEEVMKKDYKRKDRKLKIVLRRDELEKIILFQLNADGANKGGDAKLASFGVFLRELEAERLAGEAAAAVAKEEKSSRRLCRRWKPSLESVIEWPEEIVVN

   WD40 Template    TGECLRTLSGHTS------------------GVTSVSFSPD---------GKRLVSGSEDGTI------------------------------------------K-----VWD------