Input parameters:

  Query = AT4G07410.2 (Len=702)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G07410.2, Len=702):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALAPISGFSSDVEGIKNGYLSEKSNDEEEIGSEEDGSDSDEFHEKSEEEIDRILAAACDDGCVRLYRISNLEKLTYYRS 80  
WD40-rpts                       (_______________________WD 1______________________)        (___

Query       81 LPRVSGRALSVTWSPDAKRIFSGSSDGLIRCWDATSCHEVYRITAGLGGLGSSSEICVWSLLSLRCSVLVSGDSTGTVQF 160 
WD40-rpts      _____________WD 2_______________)   (____________________WD 3___________________

Query      161 WDSEHGTLLEAHSNHKGDVNTLAAAPSHNRVFSAGADGQVILYKLSGSTNGSQDLKPSSSQKWDYIGYVKAHTHDIRALT 240 
WD40-rpts      _)   (_________________WD 4________________)                  (_________________

Query      241 VAVPISREDPFPDDILPDKASRKHRKKGKPVDFTYHKWAHLGVPMLISAGDDAKLFAYSIQEFTKFSPHDICPAPQRIPM 320 
WD40-rpts      WD 5________________)(________________WD 6________________)                     

Query      321 QMVHNSMFNKTSLLLVQGISTLDILRLNISSDSSGRASTKSLVRVKSRDARKIICSAISNTGSHFAYSDQIGPSLFELKK 400 
WD40-rpts                                   (_____________________WD 7_____________________)   

Query      401 NEFTKCPWSVSRRRLPELPFAHSMIFSSDCSRLIIAGHDRRIYTIDISSLELVYAFTPSREEHEGEAPTPKEPPITKLFT 480 
WD40-rpts             (_________________WD 8________________)          (___________________WD 9

Query      481 SSDGQWLAAINCFGDIYVFNLETQRQHWFISRLDGASVTAAGFHPWNNNALVISTSSNQVFAFDVEARQLGKWSLLNTYV 560 
WD40-rpts      ___________________)    (_________________WD10_________________)              (_

Query      561 LPKRYQEFPGEVLGLSFSPSPNSSSVIVYSSRAKCLIDFGKPVEEDEEYDLPNGNLSKTLEGKLVNLGLKKGKGTNRKRR 640 
WD40-rpts      ________________WD11________________)                                           

Query      641 LDEYQLEGKSNERKNFEILPSNHPVLFVGHLSKNSILVIEKPWMDVVKSLDNQPVDRHIFGT 702 
WD40-rpts                                                                    

11 WD40-repeats found in QUERY=AT4G07410.2 (Len=702):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    18-68       6.61  387.79  0.00037       12.5%     49.33
  WD 2:  Seg  6    77-113      9.23  495.96  1.3e-05       42.5%     46.08
  WD 3:  Seg  9   117-162      6.73  392.64  0.00032       30.0%     39.92
  WD 4:  Seg 13   166-204      8.91  482.53  2.0e-05       25.0%     53.75
  WD 5:  Seg 17   223-261      6.14  368.42  0.00067       10.0%     34.14
  WD 6:  Seg 20   262-299      4.51  301.03  0.00545       10.0%     37.22
  WD 7:  Seg 26   350-397      3.77  270.59  0.01396       10.0%     52.19
  WD 8:  Seg 30   408-446      7.59  428.11  0.00011       25.0%     48.07
  WD 9:  Seg 34   457-500      7.06  406.16  0.00021       22.5%     46.38
  WD10:  Seg 37   505-544      5.31  333.86  0.00197       17.5%     55.90
  WD11:  Seg 42   559-597      3.08  241.70  0.03389       15.0%     35.10

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   18-68     NG----Y---------LSEKSNDEEEIGSEEDGSDSDEFHEKS-------EEEID-RILAAACDDGCVRLYR
   WD 2   77-113    ----------------YYRSLP-----------RVSGRALSVT-------WSPDA-KRIFSGSSDGLIRCWD
   WD 3  117-162    -C----H---------EVYRIT-----------AGLGGLGSSSEICVWSLLSLRC-SVLVSGDSTGTVQFWD
   WD 4  166-204    -G----T---------LLEAHS-----------NHKGDVNTLA-------AAPSH-NRVFSAGADGQVILYK
   WD 5  223-261    -W----D---------YIGYVK-----------AHTHDIRALT-------VAVPI-SREDPFPDDILPDKAS
   WD 6  262-299    ------R---------KHRKKG-----------KPVDFTYHKW-------AHLGV-PMLISAGDDAKLFAYS
   WD 7  350-397    SS----DSSGRASTKSLVRVKS-----------RDARKIICSA-------ISNTG-SHFAYSD-QIGPSLFE
   WD 8  408-446    -W----S---------VSRRRL-----------PELPFAHSMI-------FSSDC-SRLIIAGHDRRIYTID
   WD 9  457-500    TPSREEH---------EGEAPT-----------PKEPPITKLF-------TSSDG-QWLAAINCFGDIYVFN
   WD10  505-544    -R----Q---------HWFISR-----------LDGASVTAAG-------FHPWNNNALVISTSSNQVFAFD
   WD11  559-597    -Y----V---------LPKRYQ-----------EFPGEVLGLS-------FSPSP-NSSSVIVYSSRAKCLI

   WD40 Template    TG----E---------CLRTLS-----------GHTSGVTSVS-------FSPDG-KRLVSGSEDGTIKVWD