Input parameters:

  Query = AT4G06534.1 (Len=405)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G06534.1, Len=405):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRWAHFTAGIVSVVVLSSLLVVFLRRWCCLRREITTTLKAASPIRSDSFQARISKLHQTSLIHQLDTSDIKRRGNIKNY 80  
WD40-rpts                                                                                      

Query       81 SISRTATAGGFPSKPGLFIWTDHPALVTEAVENGWTRFGFAVHEPAPLVSGASPGSVLLGLCTTAGSEDPGVVISWEVSN 160 
WD40-rpts                                      (____________________WD 1___________________)   

Query      161 GSVEFTQTIKFNQAFNETVNAKKHLMILRAGLPLPGPQLISSAFPQEAYFEITILEITQHHSGEAGDVGCDLVEGEKTKL 240 
WD40-rpts                                                                                      

Query      241 FKNQGLKLVKRSEWDGKNEEAVLSLGLATGGSFGAGETRLPGKFPASIGFQSDGAIYLDGTYLFVYLHHLVSLSNNGSSN 320 
WD40-rpts                                                                                      

Query      321 FLLLRKSKKFCGESFCKKVNGNIVKYMKIGCPLRIYIFGNEKWRPTKEYKRRGTNQPSTSSRSPNSYHTSLLWLIKDKQG 400 
WD40-rpts                                                                                      

Query      401 NNSFY 405 
WD40-rpts           

1 WD40-repeats found in QUERY=AT4G06534.1 (Len=405):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   113-157      2.81  230.82  0.04719       15.0%     11.22

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  113-157    NGWTRFGFAVHEPAPLVSGASPGSVLLGLCTTAGSEDPGVVISWE

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDG-----KRLVSGSEDGTIKVWD