Input parameters:

  Query = AT4G05410.1 (Len=504)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G05410.1, Len=504):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKYNNEKKKGGSFKRGGKKGSNERDPFFEEEPKKRRKVSYDDDDIESVDSDAEENGFTGGDEDGRRVDGEVEDEDEFADE 80  
WD40-rpts                                                                                      

Query       81 TAGEKRKRLAEEMLNRRREAMRREREEADNDDDDDEDDDETIKKSLMQKQQEDSGRIRRLIASRVQEPLSTDGFSVIVKH 160 
WD40-rpts                                                                            (_________

Query      161 RRSVVSVALSDDDSRGFSASKDGTIMHWDVSSGKTDKYIWPSDEILKSHGMKLREPRNKNHSRESLALAVSSDGRYLATG 240 
WD40-rpts      ________WD 1________________)                      (_________________WD 2_______

Query      241 GVDRHVHIWDVRTREHVQAFPGHRNTVSCLCFRYGTSELYSGSFDRTVKVWNVEDKAFITENHGHQGEILAIDALRKERA 320 
WD40-rpts      _________)   (_________________WD 3________________)   (________________WD 4____

Query      321 LTVGRDRTMLYHKVPESTRMIYRAPASSLESCCFISDNEYLSGSDNGTVALWGMLKKKPVFVFKNAHQDIPDGITTNGIL 400 
WD40-rpts      ____________)  (________________WD 5________________)          (________________

Query      401 ENGDHEPVNNNCSANSWVNAVATSRGSDLAASGAGNGFVRLWAVETNAIRPLYELPLTGFVNSLAFAKSGKFLIAGVGQE 480 
WD40-rpts      ___________WD 6___________________________)     (_________________WD 7__________

Query      481 TRFGRWGCLKSAQNGVAIHPLRLA 504 
WD40-rpts      ______)                 

7 WD40-repeats found in QUERY=AT4G05410.1 (Len=504):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   151-189      9.27  497.58  1.2e-05       37.5%     53.61
  WD 2:  Seg  7   212-250      8.54  467.60  3.1e-05       22.5%     40.95
  WD 3:  Seg 10   254-292      9.74  516.80  6.7e-06       35.0%     52.30
  WD 4:  Seg 14   296-333      6.75  393.31  0.00031       15.0%     48.24
  WD 5:  Seg 18   336-373      7.21  412.31  0.00017       27.5%     52.82
  WD 6:  Seg 23   384-443      7.50  424.53  0.00012       22.5%     46.60
  WD 7:  Seg 26   449-487      6.08  365.85  0.00073       25.0%     42.13

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  151-189    -T--------------------DGFSVIVKHRRSVVSVALSDDDSRGFSASKDGT-IMHWD
   WD 2  212-250    -K--------------------LREPRNKNHSRESLALAVSSDGRYLATGGVDRH-VHIWD
   WD 3  254-292    -R--------------------EHVQAFPGHRNTVSCLCFRYGTSELYSGSFDRT-VKVWN
   WD 4  296-333    -K--------------------AFITENHGHQGEILAIDALRKERALTVGR-DRT-MLYHK
   WD 5  336-373    -E--------------------STRMIYRAPASSLESCCFISDNEYL-SGSDNGT-VALWG
   WD 6  384-443    KNAHQDIPDGITTNGILENGDHEPVNNNCSANSWVNAVATSRGSDLAASGAGNGF-VRLWA
   WD 7  449-487    IR--------------------PLYEL--PLTGFVNSLAFAKSGKFLIAGVGQETRFGRWG

   WD40 Template    TG--------------------ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-IKVWD