Accession: AT4G03550.1 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT4G03550.1 (Len=1780)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G03550.1, Len=1780):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLRHRTVPPQTGRPLAAEAVGIEEEPYNIIPVNNLLADHPSLRFPEVRAAAAALKTVGDLRRPPYVQWRSHYDLLDWLA 80  
WD40-rpts                                                                                      

Query       81 LFFGFQKDNVRNQREHMVLHLANAQMRLSPPPDNIDSLDSAVVRRFRRKLLANYSSWCSYLGKKSNIWISDRNPDSRREL 160 
WD40-rpts                                                                                      

Query      161 LYVGLYLLIWGEAANLRFMPECICYIFHNMASELNKILEDCLDENTGQPYLPSLSGENAFLTGVVKPIYDTIQAEIDESK 240 
WD40-rpts                                                                                      

Query      241 NGTVAHCKWRNYDDINEYFWTDRCFSKLKWPLDLGSNFFKSRGKSVGKTGFVERRTFFYLYRSFDRLWVMLALFLQAAII 320 
WD40-rpts                                                                                      

Query      321 VAWEEKPDTSSVTRQLWNALKARDVQVRLLTVFLTWSGMRLLQAVLDAASQYPLVSRETKRHFFRMLMKVIAAAVWIVAF 400 
WD40-rpts                                                                                      

Query      401 TVLYTNIWKQKRQDRQWSNAATTKIYQFLYAVGAFLVPEILALALFIIPWMRNFLEETNWKIFFALTWWFQGKSFVGRGL 480 
WD40-rpts                                                                                      

Query      481 REGLVDNIKYSTFWIFVLATKFTFSYFLQVKPMIKPSKLLWNLKDVDYEWHQFYGDSNRFSVALLWLPVVLIYLMDIQIW 560 
WD40-rpts                                                                                      

Query      561 YAIYSSIVGAVVGLFDHLGEIRDMGQLRLRFQFFASAIQFNLMPEEQLLNARGFGNKFKDGIHRLKLRYGFGRPFKKLES 640 
WD40-rpts                                                                                      

Query      641 NQVEANKFALIWNEIILAFREEDIVSDREVELLELPKNSWDVTVIRWPCFLLCNELLLALSQARELIDAPDKWLWHKICK 720 
WD40-rpts                                                                                      

Query      721 NEYRRCAVVEAYDSIKHLLLSIIKVDTEEHSIITVFFQIINQSIQSEQFTKTFRVDLLPKIYETLQKLVGLVNDEETDSG 800 
WD40-rpts                                                                                      

Query      801 RVVNVLQSLYEIATRQFFIEKKTTEQLSNEGLTPRDPASKLLFQNAIRLPDASNEDFYRQVRRLHTILTSRDSMHSVPVN 880 
WD40-rpts                                                                                      

Query      881 LEARRRIAFFSNSLFMNMPHAPQVEKMMAFSVLTPYYSEEVVYSKEQLRNETEDGISTLYYLQTIYADEWKNFKERMHRE 960 
WD40-rpts                                                                                      

Query      961 GIKTDSELWTTKLRDLRLWASYRGQTLARTVRGMMYYYRALKMLAFLDSASEMDIREGAQELGSVRNLQGELGGQSDGFV 1040
WD40-rpts                                                                                      

Query     1041 SENDRSSLSRASSSVSTLYKGHEYGTALMKFTYVVACQIYGSQKAKKEPQAEEILYLMKQNEALRIAYVDEVPAGRGETD 1120
WD40-rpts                                                                                      

Query     1121 YYSVLVKYDHQLEKEVEIFRVKLPGPVKLGEGKPENQNHAMIFTRGDAVQTIDMNQDSYFEEALKMRNLLQEYNHYHGIR 1200
WD40-rpts                                                                                  (___

Query     1201 KPTILGVREHIFTGSVSSLAWFMSAQETSFVTLGQRVLANPLKVRMHYGHPDVFDRFWFLSRGGISKASRVINISEDIFA 1280
WD40-rpts      __________________________WD 1____________________________)                     

Query     1281 GFNCTLRGGNVTHHEYIQVGKGRDVGLNQISMFEAKVASGNGEQVLSRDVYRLGHRLDFFRMLSFFYTTVGFFFNTMMVI 1360
WD40-rpts                                                                                      

Query     1361 LTVYAFLWGRVYLALSGVEKSALADSTDTNAALGVILNQQFIIQLGLFTALPMIVEWSLEEGFLLAIWNFIRMQIQLSAV 1440
WD40-rpts                                                                                      

Query     1441 FYTFSMGTRAHYFGRTILHGGAKYRATGRGFVVEHKGFTENYRLYARSHFVKAIELGLILIVYASHSPIAKDSLIYIAMT 1520
WD40-rpts                                                                                      

Query     1521 ITSWFLVISWIMAPFVFNPSGFDWLKTVYDFEDFMNWIWYQGRISTKSEQSWEKWWYEEQDHLRNTGKAGLFVEIILVLR 1600
WD40-rpts                                                                                      

Query     1601 FFFFQYGIVYQLKIANGSTSLFVYLFSWIYIFAIFVLFLVIQYARDKYSAKAHIRYRLVQFLLIVLAILVIVALLEFTHF 1680
WD40-rpts                                                                                      

Query     1681 SFIDIFTSLLAFIPTGWGILLIAQTQRKWLKNYTIFWNAVVSVARMYDILFGILIMVPVAFLSWMPGFQSMQTRILFNEA 1760
WD40-rpts                                                                                      

Query     1761 FSRGLRIMQIVTGKKSKGDV 1780
WD40-rpts

1 WD40-repeats found in QUERY=AT4G03550.1 (Len=1780):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12  1197-1259     3.48  258.56  0.02023       22.5%      6.11

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1197-1259   HGIRKPTILGVREHIFTGSVSSLAWFMSAQETSFVTLGQRVLANPLKVRMHYGHPDVFDRFWF

   WD40 Template    TGECLRTLSGHTSGVTSVSF-----------------------SPDGKRLVSGSEDGTIKVWD