Input parameters:

  Query = AT4G03020.1 (Len=493)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G03020.1, Len=493):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFFGPSEFDADEMGYAMSRLEIESDLCDTGKDVCGVGSSSGSHRSSEHLADLDHEISQVTKLKSSPHQRYSREVPGRHQL 80  
WD40-rpts                                                                                  (___

Query       81 PVSTVRMLAGRESNFSGRGRFSAADCCHMLSRYLPTKGPWLVDQMDSRAYVSQFSTDGSLFIAGFQGSRIRIYNVEKGWK 160 
WD40-rpts      ______________WD 1________________)(_________________WD 2________________)(_____

Query      161 VQKDILAKSLRWTVTDTSLSPDQRNLVYASMSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTD 240 
WD40-rpts      _______________WD 3___________________)           (_____________________WD 4____

Query      241 GREVVAGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRDKPAGVLVGHLEG 320 
WD40-rpts      ________________)   (_________________WD 5_________________)       (____________

Query      321 VTFIDSRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEVLRNYEWDYRWMDYPTEARDLKHPLDQSVSTYKGHSVLRTL 400 
WD40-rpts      _____WD 6________________)       (_________________WD 7________________)________

Query      401 IRCYFSPAHSTGQKYIYTGSNDSSVYIYDLVSGDKVAVLKHHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGEAPI 480 
WD40-rpts      ________WD 8________________)   (_________________WD 9________________)         

Query      481 MSKKRVRRRHFYY 493 
WD40-rpts                   

9 WD40-repeats found in QUERY=AT4G03020.1 (Len=493):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    77-115      5.99  362.03  0.00082       10.0%     37.00
  WD 2:  Seg  6   116-154      7.70  432.82  9.1e-05       17.5%     49.49
  WD 3:  Seg 10   155-199      7.83  437.90  7.8e-05       25.0%     53.35
  WD 4:  Seg 15   211-257      8.91  482.87  1.9e-05       40.0%     41.36
  WD 5:  Seg 18   261-300      8.76  476.53  2.4e-05       37.5%     56.45
  WD 6:  Seg 22   308-346      9.68  514.34  7.3e-06       37.5%     54.56
  WD 7:  Seg 26   354-392      5.48  340.88  0.00158        7.5%     27.74
  WD 8:  Seg 27   391-429      6.77  394.17  0.00030       20.0%     49.94
  WD 9:  Seg 31   433-471      9.34  500.34  1.1e-05       30.0%     55.13

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   77-115    -RHQ-------LP-----VSTVRMLAGRESNFSGR-GRFSAADCCHMLSRYLP
   WD 2  116-154    -TKG-------PW-----LVDQMDSRAYVSQFSTD-GSLFIAGFQGSRIRIYN
   WD 3  155-199    VEKG-------WKVQKDILAKSLRWTVTDTSLSPD-QRNLVYASMSPIVHIVD
   WD 4  211-257    VTEIHDGLDFSSD-----EDGGYSFGIFSVKFSTD-GREVVAGSSDDSIYVYD
   WD 5  261-300    -NRV-------SL-----RTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWD
   WD 6  308-346    -DKP-------AG-----VLVGHLEGVTFIDSRGD-GRYFISNGKDQTIKLWD
   WD 7  354-392    -APA-------RH-----EVLRNYEWDYRWMDYPT-EARDLKHPLDQSVSTYK
   WD 8  391-429    -YKG-------HS-----VLRTLIRCYFSPAHSTG-QKYIYTGSNDSSVYIYD
   WD 9  433-471    -GDK-------VA-----VLKHHSSPVRDCNWHPY-YPTLISSSWDGDLVKWE

   WD40 Template    TGEC-------LR-----TLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD