WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT4G02660.1 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT4G02660.1 (Len=3527) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT4G02660.1, Len=3527): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MKWGTLLKDLKDKVGVAETTADLIAGEAISDPTTPPSSSQASPSSSFAALAQHDFNLLSPTSRDKLKLELDFKRYWEEFR 80
WD40-rpts
Query 81 SSSSEQEKEAALNLSVNTFCRLVKQHANVDQLVTMLVEPHIFSFVIGRAFVADVEKLKVSSRKRSLDVEKAIEFFSEVTK 160
WD40-rpts
Query 161 DGSSHGANLLTAIEVLASGPFDKQSLLDSGILCCLIHTFNAFLTYSVASEGEKTVNYEEKVEGSVVNIMKALASHPSAAQ 240
WD40-rpts
Query 241 SLIEDDSLQLLFKMVANGSLMAFSRFKVGLVSFHNIQLHKNAMQILGLLLVNDNGSTASYIRKHHLIKVLLMAVKDFDPD 320
WD40-rpts
Query 321 CGDSAYTVGIVDLLLECVELSYRPETGGVRLKDDIRNAHGYHFLVQFALILSSMPKDIVFAFDHSSPHKNRGSNDSKKQP 400
WD40-rpts
Query 401 PLSLKTRQNDDSEKQQSLSLNSRQNDEFALKHFSPALSRLLDVLVTLAQTGPIESSGTSTSLLSQTKLTGYSRRQTPSAN 480
WD40-rpts
Query 481 NRYDEPCEQGSGKVKDLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHLENYRICQELKTVPLLVLNMGGFPSSLQEL 560
WD40-rpts
Query 561 ILKILEYAVTVVNCVPEQELLSLCFLLQQPIDSELKHTILSFFVKLTSFDQQYKKVLGEVGVLEVLQDDLKQHKLLRGPD 640
WD40-rpts
Query 641 QYSGVSNHLDRVPSSPSFKQHLDSQDAIISSPKLMESGSGKLPIFEVERTITVGWDCMISLLKNSQVNQEAFRSANGVTV 720
WD40-rpts
Query 721 ILPFLIADEHRTSILRIFSCLITGDIKQVHHEELEALIDVLKSGMVTRVSGDQYKLHYEVRCDIMGALWRIVGVNGSAQR 800
WD40-rpts
Query 801 VFGEATGFSLLLTTLHTFQGEEECRDESHLMVYIKLFKHLLRLITTAVCENAINRMKLHSVITSQTFYDLLVESGLLCVD 880
WD40-rpts
Query 881 LERHVIQLLLELALEVLVPPFLTSESMASAEMAECEKASFLVKTASGQFNPDKQKIYNAGAVRVLIRSLLLCTPKLQLEF 960
WD40-rpts
Query 961 LNLLERLARASPFNKETLTSAGCVELLLEIIYPFLQGSSPFLSHALKIVEVLGAYRLSPSELKMLCRYVMQMRVMNSGPS 1040
WD40-rpts
Query 1041 LIGMMEKLILMEEDTGLECVSLAPFVEMDMSKTGHASVQVSLGERSWPPAAGYSFVCWVQFRNFLTTQELESEVYKAGGS 1120
WD40-rpts
Query 1121 SKTPILSGQQSEQNIFRIFSVNAISNGSPSYAELYFQEDGILTLATSNSNSLSFSGLETEEGKWHHLAVVHSKPNALAGL 1200
WD40-rpts
Query 1201 FQASVAYVYIDGKLRHMGKLGYSPSPVGKSLQVIIGTSATCARACGGDSMAILDLLDTDMSSGIQKFEDSNRQGDSKAHC 1280
WD40-rpts
Query 1281 SGIVWDLDRLGNLSIQLPGKKLIFAFDGTCSEFMRATGSFSLVNLVDPLSAAASLIGGIPRFGRLVGNVSLCRQNVIGNS 1360
WD40-rpts
Query 1361 IRPVGGMAVVLALVEAAESRDMLHMALSLLACALHQNSQNVKDMETYTGYHLLALFLRPKMALFDMQCLEIFFQISACEA 1440
WD40-rpts
Query 1441 FFSEPKKLESGQTTISMSPTEIIPENNYEDPTLCKFQYETSSVGSHGDMDDFSGRKDSFSHLSELEMGDNPVETSNCIVL 1520
WD40-rpts
Query 1521 SNADMVEHVLLDWTLWVTAPVSIQIASLGFLENLISILWYRSHNLAILRQINLVKHLLVTLQRGDVEVLVLEKLVILLRC 1600
WD40-rpts
Query 1601 ILENGFLTPELEDVVRFAIMTFNPPEIKSQNSSMRESMGKHVIVRNLVLEMLIDLQVTIKAEELLEQWHKTVSSKLITYF 1680
WD40-rpts
Query 1681 LDGAVHPSSMRWIMTLLGVCLTSSPNFSLKFFASGGYQGLVRVLQSFYDSPDIYYILFCLIFGKPVYPRLPEVRMLDFHA 1760
WD40-rpts
Query 1761 LMPDDGSHVELNFVDLLDSVVAMAKSTFDRLIMQSMLAHQSGNLSQVSARCVAELVEGYADMTGELQGKALMHKTYAARL 1840
WD40-rpts
Query 1841 MGGEASAPATATSVIRFMVDLAKMCPQFSAACKNTEFLQKCADLYFSCVRAFHAVKLAKQLSMKAEEQNITGGDDSSVEG 1920
WD40-rpts
Query 1921 NFCRVSHQDMSTKTSISAGSFPQDQTSSVISVDMYIPSDYVAVDKVENFLTTPPGESNKSFQGREYIAKQDGDHVGSVSA 2000
WD40-rpts
Query 2001 SSEMKSLDLTGSSSQVQPIDSRSSESFSMLESPLLSEKSSLEVPFIPSPSKSSTISTPHPSHISVSEFDASSDQSSGSQG 2080
WD40-rpts
Query 2081 SSAVHTLFTISPKVLLETDESGYGGGPCSAGASAVLDFMAEVCADIMTEQIKAVQALESILEMLPLYVDPECVVVFQGLC 2160
WD40-rpts
Query 2161 LSRVMNYLERRFLRDDEEDDKKLDKRKWSANLDAFCWMIVDRVYMGAFPQPTGVLRTLEFLLSILQLANKDGRVEEVTSS 2240
WD40-rpts
Query 2241 GKGLLSIGRATRQLDAYVHSILKNTNRTILYCFLPSFLITIGEEDLPSRLGLLVESTKKQTSKLSGKESGIDVSAVLQLL 2320
WD40-rpts
Query 2321 VANKNIILCPSNLDTDLNCCLCVNLISLLHDQRKNVQNMASNIIKYLLVHRKSALEDLLVKKPHRGQKFDVLHGGFDRLL 2400
WD40-rpts
Query 2401 TGNLPEFSKWLESSEQIITKVLEQGAAVMWIQYIAGSAKFPDVRMKGMDGRRTREMGRKLRDTSKLDLKHWEQVNERRYA 2480
WD40-rpts
Query 2481 LEVVRDAMSAELRVVRQNKYGLILHAESVWPTHLQQLVHERGIFPMRISHGVEDLKWQLCPIEGPYRMRKKLERCKLKID 2560
WD40-rpts
Query 2561 SLHNLLEGKLELGEIELLKSKSEDGLVISDMDSEPAFLLSELYSESFSEEADDLKDVPSARNGWNNDRATSTNAASLHNS 2640
WD40-rpts
Query 2641 LSFGGKSSSTAVSVPISVNTDEKSETGSPIKSSSGKMDEIKHVEEESEKELKDDGEYLIRPYLEHLEKIRFRYNCERVVG 2720
WD40-rpts
Query 2721 LDKHDGIFLIGELCLYVIENFYIDDHGCICEKECEDELSIIDQAQGLKKQFHGSLESKSKSSTLWSTTIKIGAVGGRAWA 2800
WD40-rpts
Query 2801 YGGGAWGKEKVRVTGNLPHPWHMWKLDSVHEILKRDYELRRVAVEIFSMDGCNDLLVFHKKEREEVFRNLLAMNLPRNSM 2880
WD40-rpts
Query 2881 LDTTISGSAKQESKEGSRLFKLMAKSFTKRWQNGEISNFQYLMHLNTLAGRGYSDLTQYPVFPWILADYDGESLDLSDPN 2960
WD40-rpts
Query 2961 NFRKLDKPMGCQTPEGEEEFRKRYESWDDPEVPQFHYGSHYSSAGIVLFYLIRLPPFSAENQKLQGGQFDHADRLFNSIR 3040
WD40-rpts
Query 3041 ETWLSAAGKGNTSDVKELIPEFFYMPEFLENRFNLDLGEKQSGDKVGDVILPPWARGSVREFIRKHREALESDYVSENLH 3120
WD40-rpts
Query 3121 HWIDLIFGHKQRGKAAENAVNVFYHYTYEGNVDVDAVTDPAMKASILAQINHFGQTPKQLFQKPHVKRRTDRKVPPHPLK 3200
WD40-rpts
Query 3201 HSMHLVPRNIRKCSSSINQIITFNDKLLLTGANCLLKPRGYKKYIRWGFPDRTLRFMSYDQDKLLSTHENLHEGNQIQCA 3280
WD40-rpts (_______________
Query 3281 GVSHDGRIVVTGAEDGLVSVWRVSKDGPRGSRRLRLEKSLCAHTAKVICLRVSQPYMMIASSSDDCTVIIWDLSSLSFVR 3360
WD40-rpts _WD 1________________) (______________________WD 2_____________________)
Query 3361 QLPNFSVPVTVVYINDLTGEIVTAAGSVLAVWSINGDCLSVVNTSQLPTDLIVSVAGSTFSDWLETTWYVTGHQSGALKV 3440
WD40-rpts (_________________WD 3_______________
Query 3441 WRMVHCTDPVSVPSKTPSNRTGGLNLGNQKPEYKLLLHKELKFHKQPVTSLHLTTDLKQLLSGDSAGHLLSWTVPDEILK 3520
WD40-rpts _) (______________WD 4_____________)
Query 3521 ASLKKAS 3527
WD40-rpts
 4 WD40-repeats found in QUERY=AT4G02660.1 (Len=3527): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 38 3265-3302 4.28 291.42 0.00734 27.5% 41.87 WD 2: Seg 41 3304-3352 5.89 358.17 0.00093 27.5% 53.52 WD 3: Seg 50 3404-3442 2.89 233.94 0.04294 25.0% 12.83 WD 4: Seg 54 3481-3513 4.37 295.30 0.00651 30.0% 46.70Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3265-3302 LS---------THENLHEG--NQIQCAGVSHDGRIVVTGAEDGLVSVWR WD 2 3304-3352 SKDGPRGSRRLRLEKSLCAHTAKVICLRVSQPYMMIASSSDDCTVIIWD WD 3 3404-3442 TS---------QLPTDLIVSVAGSTFSDWL-ETTWYVTGHQSGALKVWR WD 4 3481-3513 ----------------LKFHKQPVTSLHLTTDLKQLLSGDSAGHLLSWT WD40 Template TG---------ECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |