Input parameters:

  Query = AT4G01860.2 (Len=1308)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G01860.2, Len=1308):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEENSRRKWNPHAGPYLGEVSSLAFLNLPQHVSSIPYLLAGSGSEILLYDLSSGELIRSFQVFEGVRVHGTVCSKSFVH 80  
WD40-rpts                    (________________WD 1_______________)                             

Query       81 SAERYTYKLVIFGEKKVKIFSLIVELASSSGEISVNLENFESLPRLSNWVFDVCFLQDSTGSLEEEDKLLAIGCSDNSLS 160 
WD40-rpts                                   (________________________WD 2______________________

Query      161 IWDVKESRMAFEIQSPERCLLYTMRLWGDSISTLRIASGTIFNEIIVWRAVGLDGDNVDHGHYSASHMLRLTGHEGSIFR 240 
WD40-rpts      __)   (___________________WD 3__________________)               (_______________

Query      241 IVWSLDGSKIVSVSDDRSARIWEIDSQEVVGPVLFGHSVRVWDCCISDSLIVTAGEDCTCRVWGVDGTQLEVIKEHIGRG 320 
WD40-rpts      __WD 4________________)     (_______________WD 5_______________)   (____________

Query      321 IWRCLYDPNSSLLVTAGFDSAIKVHQLHNRGSETSLDAVGVLNSPDKLEYFSTCLPNSTKHTGLTDSKSEYVRCLQFTQE 400 
WD40-rpts      _____WD 6________________)                            (___________________WD 7__

Query      401 DTIYVATNHGCLYHARLLSSGNVRWTELVRIPEEGPIITMDVMSGGKVRESCALDDWVALGDGKGNMTIVRVIGDMYNPH 480 
WD40-rpts      ________________)(____________________WD 8___________________)           (______

Query      481 AGLNQSWKASPERQLLGAFWCKSLGYRFVFSCNPRGLLKLWKLSGSLESAAETYDVSLLAEFSSGFGKRIMCVDASVEDE 560 
WD40-rpts      ________________WD 9_____________________) (_______________________WD10_________

Query      561 VILCGDLRGNITLFPLTKDMLHGVSVSSELKIPSLKYFKGAHGISTVSSLSVARLTSNKAEICSTGADGCICYFEYDREM 640 
WD40-rpts      ______________)   (_________________WD11________________)                       

Query      641 QTLEFMGLKQLKELNLVQSVCQGVQFSEDHPNNDYAAGFASTDFILWNLTAETKVTQISCGGWRRPHSFYLGEIPEWQNC 720 
WD40-rpts            (__________________WD12__________________)      (_________________WD13____

Query      721 FAYVKDDVIHIHRHWVGGQKTKVFPLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIATGCEDGSVRLSRYA 800 
WD40-rpts      ____________)                          (_________________WD14________________)  

Query      801 SEFGNWSTSELLGEHVGGSAVRSVCCVSNMHMMSSDVPNLPDMCDQDYAVDDCESPRLLISVGAKRVVTSWLLRNGRHKK 880 
WD40-rpts                                  (___________________WD15___________________)        

Query      881 KGESCISDNGHNRASSEVSPVTFQWLATDMPTKYRPCGKIEKSPKLEGVEEDTSANVTKLGSNTYNERENYEDDWRYMAA 960 
WD40-rpts                                                                                      

Query      961 TAFLVKCVGSRLTICFIAVACSDATLTLRALVLPHRLWFDVASLVPLKSPVLSLQHAVVPLDPPHEGNTPYSDVYLLISG 1040
WD40-rpts                                                              (______________WD16_____

Query     1041 ATDGSIGFWDVTKCVEAFVKQVSSIHIEKYIDCQLRPRTGRGSQGGRKWKLLGSKISKRAQENSNSVGEAAEEDPASSLE 1120
WD40-rpts      _________)(_________________WD17_________________)     (________________WD18____

Query     1121 LTNDHPQENGKNEDADSLPETSEIKTSHVVKNAHQSGVNCLHVSRSNSSPSYGNGLMFNVISGGDDQALHCLSFNILSSS 1200
WD40-rpts      ___________)                  (____________WD19___________)                     

Query     1201 NNRATISEIMDLNQTPSYRIMLTDRGGIASAHSSAIKGVWMDTNWVFSTGLDQRVRCWFLEKDGKLIEHAHIVISVPEPE 1280
WD40-rpts                             (_______________WD20_______________)                     

Query     1281 ALDAKAIDENRYQIAVAGRGIQMVEFSG 1308
WD40-rpts                                  

20 WD40-repeats found in QUERY=AT4G01860.2 (Len=1308):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-51       3.17  245.78  0.02992       17.5%     30.20
  WD 2:  Seg 11   110-163      6.81  396.10  0.00029       32.5%     45.29
  WD 3:  Seg 15   167-209      6.20  370.66  0.00063       17.5%     54.47
  WD 4:  Seg 19   225-263      8.66  472.46  2.7e-05       27.5%     55.71
  WD 5:  Seg 23   269-304      6.18  369.93  0.00064       27.5%     46.36
  WD 6:  Seg 26   308-346      7.95  443.15  6.6e-05       20.0%     56.98
  WD 7:  Seg 32   375-417      6.09  366.18  0.00072        7.5%     45.72
  WD 8:  Seg 36   418-462      6.58  386.52  0.00038       12.5%     54.01
  WD 9:  Seg 41   474-522      5.32  334.23  0.00195       22.5%     36.76
  WD10:  Seg 45   524-575      6.88  398.98  0.00026       20.0%     56.81
  WD11:  Seg 49   579-617      6.40  379.22  0.00048        5.0%     42.41
  WD12:  Seg 56   647-688      8.17  452.25  5.0e-05       22.5%     52.84
  WD13:  Seg 60   695-733      5.51  342.30  0.00152        7.5%     33.99
  WD14:  Seg 65   760-798      6.81  395.85  0.00029       15.0%     35.36
  WD15:  Seg 70   829-872      5.74  351.68  0.00113       12.5%     31.08
  WD16:  Seg 81  1017-1050     6.40  378.93  0.00049       22.5%     18.29
  WD17:  Seg 83  1051-1090     6.52  383.89  0.00042       12.5%     17.88
  WD18:  Seg 85  1096-1132     4.74  310.33  0.00409        5.0%     10.23
  WD19:  Seg 87  1151-1179     3.47  257.92  0.02062       17.5%     15.45
  WD20:  Seg 91  1224-1259     5.93  359.45  0.00089       20.0%     28.18

Multiple sequence alignment of 20 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-51     -GP------------Y------LG---E----VSSLAF----LNLPQHVSSIP--------YL--L-------------A--GSGSEILLYD
   WD 2  110-163    SGE------------ISVNLENFE---S----LPRLSN----WVFDVCFLQDSTGSLEEEDKL--L-------------AIGCSDNSLSIWD
   WD 3  167-209    -SR------------M------AF---E----IQSPERCLLYTMRLWGDSIST--------LR--I-------------ASGTIFNEIIVWR
   WD 4  225-263    -AS------------H------ML---R----LTGHEG----SIFRIVWSLDG--------SK--I-------------VSVSDDRSARIWE
   WD 5  269-304    --V------------V------GP---V----LFGHSV----RVWDCCISDS----------L--I-------------VTAGEDCTCRVWG
   WD 6  308-346    -TQ------------L------EV---I----KEHIGR----GIWRCLYDPNS--------SL--L-------------VTAGFDSAIKVHQ
   WD 7  375-417    LPN------------S------TKHTGL----TDSKSE----YVRCLQFTQED--------TI--Y-------------VATNHGCLYHARL
   WD 8  418-462    LSS-------GNVRWT------EL---V----RIPEEG----PIITMDVMSGG--------KV--R-------------ESCALDDWVALGD
   WD 9  474-522    ----------------------GD---M----YNPHAG----LNQSWKASPER--------QL--LGAFWCKSLGYRFVFSCNPRGLLKLWK
   WD10  524-575    SGSLESAAETYDVSLL------AE---F----SSGFGK----RIMCVDASVED--------EV--I-------------LCGDLRGNITLFP
   WD11  579-617    -DM------------L------HG---V----SVSSEL----KIPSLKYFKGA--------HG--I-------------STVSSLSVARLTS
   WD12  647-688    GLK------------Q------LK---E----LNLVQS----VCQGVQFSEDH--------PNNDY-------------AAGFASTDFILWN
   WD13  695-733    -VT------------Q------IS---C----GGWRRP----HSFYLGEIPEW--------QN--C-------------FAYVKDDVIHIHR
   WD14  760-798    -LC------------F------IS---T----DTKAGF----DSEESKISDRS--------SW--I-------------ATGCEDGSVRLSR
   WD15  829-872    NMH------------M------MS---SDVPNLPDMCD----QDYAVDDCESP--------RL--L-------------ISVGAKRVVTSWL
   WD16 1017-1050   ---------------------------A----VVPLDP----PHEGNTPYSDV--------YL--L-------------ISGATDGSIGFWD
   WD17 1051-1090   VTK------------C------VE---A----FVKQVS----SIHIEKYIDCQ--------LR--P-------------RTGRGSQGGRKWK
   WD18 1096-1132   ---------------I------SK---R----AQENSN----SVGEAAEEDPA--------SS--L-------------ELTNDHPQENGKN
   WD19 1151-1179   --------------------------------KNAHQS----GVNCLHVSR--------------S-------------NSSPSYGNGLMFN
   WD20 1224-1259   --D------------R------GG---I----ASAHSS----AIKGV--WMDT--------NW--V-------------FSTGLDQRVRCWF

   WD40 Template    TGE------------C------LR---T----LSGHTS----GVTSVSFSPDG--------KR--L-------------VSGSEDGTIKVWD