Input parameters:

  Query = AT4G01860.1 (Len=1308)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G01860.1, Len=1308):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEENSRRKWNPHAGPYLGEVSSLAFLNLPQHVSSIPYLLAGSGSEILLYDLSSGELIRSFQVFEGVRVHGTVCSKSFVH 80  
WD40-rpts                                                            (_____________________WD 1

Query       81 SAERYTYKLVIFGEKKVKIFSLIVELASSSGEISVNLENFESLPRLSNWVFDVCFLQDSTGSLEEEDKLLAIGCSDNSLS 160 
WD40-rpts      ____________________)        (________________________WD 2______________________

Query      161 IWDVKESRMAFEIQSPERCLLYTMRLWGDSISTLRIASGTIFNEIIVWRAVGLDGDNVDHGHYSASHMLRLTGHEGSIFR 240 
WD40-rpts      __)   (___________________WD 3__________________)               (_______________

Query      241 IVWSLDGSKIVSVSDDRSARIWEIDSQEVVGPVLFGHSVRVWDCCISDSLIVTAGEDCTCRVWGVDGTQLEVIKEHIGRG 320 
WD40-rpts      __WD 4________________)     (_______________WD 5_______________)   (____________

Query      321 IWRCLYDPNSSLLVTAGFDSAIKVHQLHNRGSETSLDAVGVLNSPDKLEYFSTCLPNSTKHTGLTDSKSEYVRCLQFTQE 400 
WD40-rpts      _____WD 6________________)                            (___________________WD 7__

Query      401 DTIYVATNHGCLYHARLLSSGNVRWTELVRIPEEGPIITMDVMSGGKVRESCALDDWVALGDGKGNMTIVRVIGDMYNPH 480 
WD40-rpts      ________________)(____________________WD 8___________________)          (_______

Query      481 AGLNQSWKASPERQLLGAFWCKSLGYRFVFSCNPRGLLKLWKLSGSLESAAETYDVSLLAEFSSGFGKRIMCVDASVEDE 560 
WD40-rpts      _______________WD 9______________________) (_______________________WD10_________

Query      561 VILCGDLRGNITLFPLTKDMLHGVSVSSELKIPSLKYFKGAHGISTVSSLSVARLTSNKAEICSTGADGCICYFEYDREM 640 
WD40-rpts      ______________)   (_________________WD11________________)                       

Query      641 QTLEFMGLKQLKELNLVQSVCQGVQFSEDHPNNDYAAGFASTDFILWNLTAETKVTQISCGGWRRPHSFYLGEIPEWQNC 720 
WD40-rpts           (___________________WD12__________________)      (_________________WD13____

Query      721 FAYVKDDVIHIHRHWVGGQKTKVFPLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIATGCEDGSVRLSRYA 800 
WD40-rpts      ____________)              (_______________________WD14______________________)  

Query      801 SEFGNWSTSELLGEHVGGSAVRSVCCVSNMHMMSSDVPNLPDMCDQDYAVDDCESPRLLISVGAKRVVTSWLLRNGRHKK 880 
WD40-rpts           (__________________WD15_________________)                (_________________

Query      881 KGESCISDNGHNRASSEVSPVTFQWLATDMPTKYRPCGKIEKSPKLEGVEEDTSANVTKLGSNTYNERENYEDDWRYMAA 960 
WD40-rpts      __WD16___________________)                                                      

Query      961 TAFLVKCVGSRLTICFIAVACSDATLTLRALVLPHRLWFDVASLVPLKSPVLSLQHAVVPLDPPHEGNTPYSDVYLLISG 1040
WD40-rpts                                                            (_______________WD17______

Query     1041 ATDGSIGFWDVTKCVEAFVKQVSSIHIEKYIDCQLRPRTGRGSQGGRKWKLLGSKISKRAQENSNSVGEAAEEDPASSLE 1120
WD40-rpts      _________)(_________________WD18_________________)  (_________________WD19______

Query     1121 LTNDHPQENGKNEDADSLPETSEIKTSHVVKNAHQSGVNCLHVSRSNSSPSYGNGLMFNVISGGDDQALHCLSFNILSSS 1200
WD40-rpts      ___________)                                                                    

Query     1201 NNRATISEIMDLNQTPSYRIMLTDRGGIASAHSSAIKGVWMDTNWVFSTGLDQRVRCWFLEKDGKLIEHAHIVISVPEPE 1280
WD40-rpts                             (_______________WD20_______________)                     

Query     1281 ALDAKAIDENRYQIAVAGRGIQMVEFSG 1308
WD40-rpts                                  

20 WD40-repeats found in QUERY=AT4G01860.1 (Len=1308):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    55-101      2.83  231.44  0.04632       22.5%     40.58
  WD 2:  Seg 11   110-163      6.85  397.80  0.00027       32.5%     46.52
  WD 3:  Seg 15   167-209      6.17  369.65  0.00065       17.5%     54.93
  WD 4:  Seg 19   225-263      8.67  472.78  2.6e-05       27.5%     54.66
  WD 5:  Seg 23   269-304      6.22  371.77  0.00061       27.5%     44.85
  WD 6:  Seg 26   308-346      7.79  436.60  8.1e-05       20.0%     56.84
  WD 7:  Seg 32   375-417      5.99  362.30  0.00082        7.5%     50.30
  WD 8:  Seg 36   418-462      6.63  388.67  0.00036       12.5%     55.60
  WD 9:  Seg 41   473-522      5.51  342.28  0.00152       25.0%     34.60
  WD10:  Seg 45   524-575      6.86  397.85  0.00027       20.0%     53.05
  WD11:  Seg 49   579-617      6.34  376.41  0.00053        5.0%     38.92
  WD12:  Seg 56   646-688      6.73  392.47  0.00032       25.0%     51.09
  WD13:  Seg 60   695-733      5.37  336.67  0.00181        7.5%     32.65
  WD14:  Seg 65   748-798      6.79  395.09  0.00029       15.0%     34.86
  WD15:  Seg 68   806-846      3.98  279.21  0.01070       17.5%     23.30
  WD16:  Seg 72   863-906      4.66  307.27  0.00449       15.0%     35.34
  WD17:  Seg 82  1015-1050     5.56  344.41  0.00142       22.5%     16.85
  WD18:  Seg 84  1051-1090     6.58  386.66  0.00038       12.5%     21.59
  WD19:  Seg 86  1093-1132     7.30  416.41  0.00015        5.0%      9.40
  WD20:  Seg 92  1224-1259     5.88  357.58  0.00094       20.0%     25.12

Multiple sequence alignment of 20 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-101    -G-E------------L------IR---SF----QVFEGVRVHG----T--VCSKSFVHSA--------ER--Y-------------TYKLVIFGEKKVKIFS
   WD 2  110-163    SG-E------------ISVNLENFE---SL----PRLS-----N----W--VFDVCFLQDSTGSLEEEDKL--L-------------AIG---CSDNSLSIWD
   WD 3  167-209    -S-R------------M------AF---EI----QSPE-----RCLLYT--MRLWGDSIST--------LR--I-------------ASG---TIFNEIIVWR
   WD 4  225-263    -A-S------------H------ML---RL----TGHE-----G----S--IFRIVWSLDG--------SK--I-------------VSV---SDDRSARIWE
   WD 5  269-304    ---V------------V------GP---VL----FGHS-----V----R--VWDCCISDS----------L--I-------------VTA---GEDCTCRVWG
   WD 6  308-346    -T-Q------------L------EV---IK----EHIG-----R----G--IWRCLYDPNS--------SL--L-------------VTA---GFDSAIKVHQ
   WD 7  375-417    LP-N------------S------TKHTGLT----DSKS-----E----Y--VRCLQFTQED--------TI--Y-------------VAT---NHGCLYHARL
   WD 8  418-462    LS-S-------GNVRWT------EL---VR----IPEE-----G----P--IITMDVMSGG--------KV--R-------------ESC---ALDDWVALGD
   WD 9  473-522    IG-D------------------------MY----NPHA-----G----L--NQSWKASPER--------QL--LGAFWCKSLGYRFVFSC---NPRGLLKLWK
   WD10  524-575    SG-SLESAAETYDVSLL------AE---FS----SGFG-----K----R--IMCVDASVED--------EV--I-------------LCG---DLRGNITLFP
   WD11  579-617    -D-M------------L------HG---VS----VSSE-----L----K--IPSLKYFKGA--------HG--I-------------STV---SSLSVARLTS
   WD12  646-688    MGLK------------Q------LK---EL----NLVQ-----S----V--CQGVQFSEDH--------PNNDY-------------AAG---FASTDFILWN
   WD13  695-733    -V-T------------Q------IS---CG----GWRR-----P----H--SFYLGEIPEW--------QN--C-------------FAY---VKDDVIHIHR
   WD14  748-798    LH-T-QFHGRELHSLCF------IS---TD----TKAG-----F----D--SEESKISDRS--------SW--I-------------ATG---CEDGSVRLSR
   WD15  806-846    -W-S------------T------SE---LL----GEHV-----G----GSAVRSVCCVSNM--------HM--M-------------SSD---VPNLPDMCDQ
   WD16  863-906    GA-K------------R------VV---TSWLLRNGRH-----K----K--KGESCISDNG--------HN--R-------------ASS---EVSPVTFQWL
   WD17 1015-1050   QH--------------------------AV----VPLD-----P----P--HEGNTPYSDV--------YL--L-------------ISG---ATDGSIGFWD
   WD18 1051-1090   VT-K------------C------VE---AF----VKQV-----S----S--IHIEKYIDCQ--------LR--P-------------RTG---RGSQGGRKWK
   WD19 1093-1132   GS-K------------I------SK---RA----QENS-----N----S--VGEAAEEDPA--------SS--L-------------ELT---NDHPQENGKN
   WD20 1224-1259   ---D------------R------GG---IA----SAHS-----S----A--IKGV--WMDT--------NW--V-------------FST---GLDQRVRCWF

   WD40 Template    TG-E------------C------LR---TL----SGHT-----S----G--VTSVSFSPDG--------KR--L-------------VSG---SEDGTIKVWD