Input parameters:

  Query = AT4G00800.1 (Len=1913)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G00800.1, Len=1913):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MELDLDSFLVSDSDSDSDLDSSSVPHRTVDEILNASSSSSASSSPPSSPPSINRRKQDDPNRRLSEALTNVAVLRPESEL 80  
WD40-rpts                                                                                      

Query       81 HRGFPPTRRNSTSSSSLRQLPLPSLLAGVRSNVKPGAALAAAVAASRLVPTPHAAIIKSRRASSASSELLLQVSNQEEDD 160 
WD40-rpts                                                                                      

Query      161 HEVLSSNGDSVGVAAGSVSADDFRSFGGESLLEDEDNGVSGVASLEDEAKVMEVQASDITESLNPDLVTVSSGFDSEGNV 240 
WD40-rpts                                                                                      

Query      241 STEKEAETTMEAGNAAIDDDTDETMLVASLVESSESQHLTDSEGKCDDAKVSNDEESSVGDVKSDKSDIIIPESKKEGGD 320 
WD40-rpts                                                                                      

Query      321 AFIPDDGSSMSGISELVEERIAELENERMSKRERLKSQSFRKQLVLAEEFEKKQAYTGLHWEEGAAAQPMRLEGVKIGST 400 
WD40-rpts                                                                                      

Query      401 NLGYFDVDADNVISRTISSQAFKRDHGSPQVLAVHLNYIAVGTSKGVIVVVPSKYSSDHADQMESKMIWLGLQGERSQSP 480 
WD40-rpts                                                   (____________________________WD 1__

Query      481 VTSVCFNQIGSLLLAGYGDGHVTVWDMQRASIAKVITEHTAPVVYAFFLGRDSQGSRQFKVITSDTKGVVFKHSFSYARL 560 
WD40-rpts      _________________________)                                                      

Query      561 LNMYTVETQCLLDGQKNGTVLSASPLPDENFGSSLVSSKGGNSAVPSSSISSMMGGVVGVGSTWKLFNEDSTSVEEGVVI 640 
WD40-rpts                                                                                      

Query      641 FATYQTGLVVKLIPNLEVYAQLPRPEGVREGSMPYTAWRRSTENYSKEAEDRVSFLVIAWDRRVQVAKLVKSDIKEYAKW 720 
WD40-rpts                                                                                      

Query      721 SLDSPAIGVVWLDDQLLVIPTVTGHLYLFTRDGVVIHQTNFSVAGSSGNDLISYHTYFTNVFGNPEKAYHNSMGVRGASV 800 
WD40-rpts                                                                                      

Query      801 YILGTAHLVISRLLPWKERVDVLRRGGDWMGAFNMAMSLFNGQAHGVVDLPKTVDAIREAIAPSLAELLLSYVDEVFSYI 880 
WD40-rpts                                                                                      

Query      881 SIAFSNQIENNGVTHEPSSGINNVNLEIEEQYNRVGGVAVEFCVHINRMDLLFDEIFSRFVAVQQRDTFLELLEPYILRD 960 
WD40-rpts                                                                                      

Query      961 MLGSLPPEIMQALVEHYSRKGWLQRIEQCVLHMDISSLDFNQVVRICREHGLYGALLYLFNKGLDDFRSPLEELLIVLRN 1040
WD40-rpts                                                                                      

Query     1041 SEKQRATAIGYRMLVYLKYCFLGLAFPPGHGTLNPTRWPSLRSELIQFLLEKSNAHDSSTCVTSRLNYLNLYHLLEMDTE 1120
WD40-rpts                                                                                      

Query     1121 ATLDVLRYAFVENEMVKHESHLLEYGEVSVESKTDGSLPEVSNDILIQNLVDALVHVPDWGVSNESGDPIDSKSDKNWPS 1200
WD40-rpts                                                                                      

Query     1201 KEDTSHLFEFVAYYAARGRVSISKSVLAQILDYLTSDHILPTYNVSSKMRENQLLNLLKAVPETDWDADYVSQLCEKAHF 1280
WD40-rpts                                                                                      

Query     1281 YQVCGYIHIIDRRYVAALDSYVKEADEPIHLFCYVNKMLSQLSGDEFTAFQSAIISRIPELLDLSRQGAFFLIICNLKDT 1360
WD40-rpts                                                                                      

Query     1361 IKRIQEQLHSHPRSLFLYLKTVIEVYLSGSLDFSRLRKHEAVDSSGENIRRDIPKEAKIYLEGLNDFPKFIQDNPVNVTD 1440
WD40-rpts                                                                                      

Query     1441 DMIELYVELLCKYEPKSVLKFLETFDSYRVEHCLRLCQEYGIVDAAAFLLERVGDAGSALSLTLSGLNEKYVELEIAVEC 1520
WD40-rpts                                                                                      

Query     1521 LMSEMKLGASEGASLEHFSSALELKEVHDIQGVLQACIGLCQRNTPRLNPEESEILWFRFLDTFCEPLMESYREPKNTDG 1600
WD40-rpts                                                                                      

Query     1601 INKGSLGVKSLERHVNESDVAIKWRIPRSDTAATHILRKLISQFIKEIVEGMIGYVRLPTIMTKLLSDNGTQEFGDFKLT 1680
WD40-rpts                                                                                      

Query     1681 ILGMLGTYGFERRILDTAKSLIEDDTFYSMNLLKKGASHGYAPRSLLCCICSCPLTKTFSALRVRVFNCGHATHLQCEPS 1760
WD40-rpts                                                                                      

Query     1761 ENETSTSASSIHVSSSGCPVCMTKKTSKSSLKGKSFYRDYGLISTVSSNAGSSQRASPYSHENEMSDHSHNQQLSRFEIL 1840
WD40-rpts                                                                                      

Query     1841 TNLQKDQRLVQIESLPRLRLAPPAVYHEKVSRLSGFTPGESSGKDTKPVKTGQGKKPKTKGSIFGSTFGKSFL 1913
WD40-rpts                                                                               

1 WD40-repeats found in QUERY=AT4G00800.1 (Len=1913):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   446-506      4.64  306.36  0.00462       40.0%     55.74

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  446-506    GVIVVVPSKYSSDHADQMESKMIWLGLQGERSQSPVTSVCFNQIGSLLLAGYGDGHVTVWD

   WD40 Template    GECLRTLSGHTSG----------------------VTSVSFSPDGKRLVSGSEDGTIKVWD