Input parameters:

  Query = AT4G00090.1 (Len=430)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G00090.1, Len=430):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSVLVVGIASVILGALIAVLFFGSYFRKRTSEVQSMAKAEPQDPIRNPKSNHPAPKKNHPKSQASDKNQNKRHHPLDLN 80  
WD40-rpts                                                                                 (____

Query       81 TLKGHGDAVTGLCFSSDGKSLATACADGVIRVFKLDDASSKSFKFLRINLPAGGHPTAVAFADDASSIVVACHHMSGSSL 160 
WD40-rpts      _____________WD 1________________)        (_________________WD 2________________

Query      161 YMYGEDKQKDQQGKLPLPSIKWDHHHIHEKRSVLTISGATATYGTADGSVVIASCSEGTDIVLWHGKTGRNLGHVDTNQL 240 
WD40-rpts      )________WD 3_________)   (_________________WD 4________________)   (___________

Query      241 KNHMAAVSPNGRFLAAAAFTADVKVWEIVYQKDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVWNINV 320 
WD40-rpts      ______WD 5________________)           (_________________WD 6________________)   

Query      321 RYHLDEDPKTLKVFPIPLCDSGGNPLHYDRLSLCPEGKILAASHGSTLQWLCAETGNVLDTAEKAHEGDITCISWAPKAI 400 
WD40-rpts                                                 (___________________________WD 7_____

Query      401 TVGERHAMVLGTSGDDKKVKLWEAPKSQSL 430 
WD40-rpts      ______________________)       

7 WD40-repeats found in QUERY=AT4G00090.1 (Len=430):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    76-114      7.29  415.92  0.00015       42.5%     46.20
  WD 2:  Seg  4   123-161      7.10  407.96  0.00020       17.5%     45.70
  WD 3:  Seg  7   159-183      3.05  240.53  0.03513       10.0%     24.45
  WD 4:  Seg  9   187-225      8.19  452.80  4.9e-05       15.0%     55.58
  WD 5:  Seg 13   229-267      8.94  484.00  1.9e-05       22.5%     55.26
  WD 6:  Seg 17   279-317      9.62  512.10  7.8e-06       37.5%     53.79
  WD 7:  Seg 23   364-423      7.02  404.51  0.00022       27.5%     42.48

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   76-114    -PL-----DLNTLK-------GHGDAVTGLCFSSDG--------KSLATACADGVIRVFK
   WD 2  123-161    -FK-----FLRINL-------PAGGHPTAVAFADDA--------SSIVVACHHMSGSSLY
   WD 3  159-183    ---------------------------SLYMYGEDK--------QKDQQGKLPLPSIKWD
   WD 4  187-225    -IH-----EKRSVL-------TISGATATYGTADGS--------VVIASCSEGTDIVLWH
   WD 5  229-267    -GR-----NLGHVD-------TNQLKNHMAAVSPNG--------RFLAAAAFTADVKVWE
   WD 6  279-317    -VS-----RVMQLK-------GHKSAVTWLCFSPNS--------EQIITASKDGSIRVWN
   WD 7  364-423    HGSTLQWLCAETGNVLDTAEKAHEGDITCISWAPKAITVGERHAMVLGTSGDDKKVKLWE

   WD40 Template    TGE-----CLRTLS-------GHTSGVTSVSFSPDG--------KRLVSGSEDGTIKVWD