Input parameters:

  Query = AT4G00060.1 (Len=1481)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G00060.1, Len=1481):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENRHLPSKFFSSASSMAQNQLIDSLTSHISLYHSHSSSSSMANTIPNPRSAILRWFSSLSVHQRLSHLTVVDPKFVQIL 80  
WD40-rpts                                                               (______________________

Query       81 LQMLGYIRTKGPCSFIILPDLPSSSDLPSLCFKKSRGLISRVSESNESERFVFDSTRLFGSGEGERAQDCSCSVNSLDSV 160 
WD40-rpts      ______________WD 1___________________________________)                          

Query      161 VMAEEFLTNVDRFVETMDVLSDGAFLRGEESDLGSNWVELEWLKAKGYYSMEAFVANRLEVSMRLAWLNTNSGKRRGIKL 240 
WD40-rpts                                                                                      

Query      241 KEKLNAAAAAANSYWRKKACVDWWQNLDAATHKKIWTCLFGKSAKSVIYEILREANQAQQGEMWLFNFASARKGRTDTSA 320 
WD40-rpts                                                                                      

Query      321 VSFCDMILEPNSVPRKPITVASNLSGLYVLQEFASLLILCQNGLVPVHSVFFSSMGTITTLVDCILRKLRGFLMVISIDS 400 
WD40-rpts                                                                                      

Query      401 VKSELLDDNTHKCSPSSSSNQKLGSTNRKQKGKTRNMKKPTPEAKSDKNVNLSTKNGKKDQAKLEFNKSREAIECKKVPT 480 
WD40-rpts                                                                                      

Query      481 ASTMINDPEASAATMEVVPGLVARKGRTKKKRKEKNKSKKCTSLENNGEVNKSVVNSSAIVKASKCDSSCTSANQHPQEY 560 
WD40-rpts                                                                                      

Query      561 INAQIIEEHGSFSCERNRSGTCASVNGAANCEYSGEEESHSKAETHVISSDLSSVDPAGGPSCENVNPQKSCCRGDRKEK 640 
WD40-rpts                                                                                      

Query      641 LTMPNERSRTLDEGESHRIHHQRREAGYGFASSSSEFVSYEWPAVAPMYFSHVSSHLPTATDRLHLDVGHNLHPYVRQPF 720 
WD40-rpts                                                                                      

Query      721 VSTVQHARNPSIEGSHKQVLSRPMPMSLDWPPMVHSNCGLTTAFTCNYDSGILVDIPEQKNKHELGNECENNWMLEEDFE 800 
WD40-rpts                                                                                      

Query      801 VHTVSGVDYNQYFGGGVMYWNPSDHLGTGFSRPPSLSSDDSSWAWHEAEMKRSVDDMVAFSSSYSANGLDSPTAASFCSP 880 
WD40-rpts                                                                                      

Query      881 FHPLGPPNQPLGYVVPGNEISTKILQAPPTTIEGAGEEEVSGTLASLSGDVEGNSGDSLPYPILRPIIIPNMSKSEYKRS 960 
WD40-rpts                                                                                      

Query      961 YDTKSPNVPPTRREHPRIKRPPSPVVLCVPRAPRPPPPSPVSNSRARRGFPTVRSGSSSPRHWGMRGWFHDGVNWEEPRG 1040
WD40-rpts                                                                                      

Query     1041 AEIVLPWRNKSLAVRPIIQPLPGALLQDHLIAMSQLGRDQEHPDVAFPLQPPELLNCPMQGESLSLIHGILNDEIDSFCK 1120
WD40-rpts                                                                                      

Query     1121 QVAAENMARKPYINWAIKRVTRSLQVLWPRSRTNIFGSSATGLSLPSSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKET 1200
WD40-rpts                                                                                      

Query     1201 CLQHAARYLANQEWVKTDSLKTVENTAIPIIMLVVEVPCDLICSIQSPKDGPDCITVDQDSNGNTEMVGFEDSAAANSLP 1280
WD40-rpts                                                                                      

Query     1281 TNTGNLAIAKSVRLDISFKTPSHTGLQTTQLVKDLTEQFPAATPLALVLKQFLADRTLDQSYSGGLSSYCLVLLITRFLQ 1360
WD40-rpts                                                                                      

Query     1361 HEHHLGRSINQNLGGLLMDFLYFFGNVFDPRQMRVSVQGSGIYRNRERGYSIDPIHIDDPLFPTNNVGRNCFRIHQCIKA 1440
WD40-rpts                                                                                      

Query     1441 FSEAYSVLENELTCITSTSDSCGKQQLHNLLPKIIPSIISS 1481
WD40-rpts                                               

1 WD40-repeats found in QUERY=AT4G00060.1 (Len=1481):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    58-134      2.85  232.33  0.04508       22.5%      8.97

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   58-134    SSLSVHQRLSHLTVVDPKFVQILLQMLGYIRTKGPCSFIILPDLPSSSDLPSLCFKKSRGLISRVSESNESERFVFD

   WD40 Template    TGECLRTLSGHTSGVT-----------------------------------SVSFSPDGKRL--VSGSEDGTIKVWD