Input parameters:

  Query = AT3G63460.2 (Len=1102)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G63460.2, Len=1102):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MACIKGVGRSASVALAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSDDRDLPLVGEIPSSERFNRLAWGRNGSGSE 80  
WD40-rpts      (_______________WD 1______________)                         (_________________WD

Query       81 EFALGLIAGGLVDGNIDLWNPLSLIGSQPSENALVGHLSVHKGPVRGLEFNAISSNLLASGADDGEICIWDLLKPSEPSH 160 
WD40-rpts       2_________________)           (_________________WD 3_________________)(________

Query      161 FPLLKGSGSATQGEISFISWNRKVQQILASTSYNGTTVIWDLRKQKPIINFADSVRRRCSVLQWNPNVTTQIMVASDDDS 240 
WD40-rpts      ______________WD 4______________________)(_____________________WD 5_____________

Query      241 SPTLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELPAGNNWNFDVHWYPKIPG 320 
WD40-rpts      _______)    (_________________WD 6_________________)   (_________________WD 7___

Query      321 VISASSFDGKIGIYNIEGCSRYGVEENNFAPLKAPKWYKRPVGASFGFGGKLVSCHARAPAKGTSSILSEVFLHSLVTEQ 400 
WD40-rpts      ______________)                                                                 

Query      401 SLVSRTSEFEAAIENGDMTSLRGLCEKKSEETESEEEKETWGLLKIMFEEEGTSRTKLISHLGFTLPVAEKDQAVDGLSS 480 
WD40-rpts                                                                                      

Query      481 DLNGIRLEDTAADALDLDDSNEAAAFAMDNGEDFFNNFPAKPDTPVSTSAKDFMPSDTDFSTKGEETQEMQEEEEESSDP 560 
WD40-rpts                                                                                      

Query      561 VFDNAIQRALIVGDYKEAVDQCITANKMADALVIAHVGGTALWESTREKYLKTSSAPYMKVVSAMVNNDLRSLIYTRSHK 640 
WD40-rpts                                                                                      

Query      641 FWKETLALLCTFAQGEQWTTLCDALASKLMAAGNTLAAVLCYICAGNVDRTVEIWSRSLANERDGRSYAELLQDLMEKTL 720 
WD40-rpts                                                                                      

Query      721 VLALATGNKKFSASLCKLFESYAEILASQGLLTTAMKYLKVLDSGGLSPELSILRDRISLSAEPETNTTASGNTQPQSTM 800 
WD40-rpts                                                                                      

Query      801 PYNQEPTQAQPNVLANPYDNQYQQPYTDSYYVPQVSHPPMQQPTMFMPHQAQPAPQPSFTPAPTSNAQPSMRTTFVPSTP 880 
WD40-rpts                                                                                      

Query      881 PALKNADQYQQPTMSSHSFTGPSNNAYPVPPGPGQYAPSGPSQLGQYPNPKMPQVVAPAAGPIGFTPMATPGVAPRSVQP 960 
WD40-rpts                                                                                      

Query      961 ASPPTQQAAAQAAPAPATPPPTVQTADTSNVPAHQKPVIATLTRLFNETSEALGGARANTTKKREIEDNSRKLGALFVKL 1040
WD40-rpts                                                                                      

Query     1041 NSGDISKNAADKLAQLCQALDNNDFSTALQIQVLLTTSEWDECNFWLATLKRMMVKARQNVR 1102
WD40-rpts                                                                    

7 WD40-repeats found in QUERY=AT3G63460.2 (Len=1102):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-35       3.27  249.66  0.02658       15.0%     38.33
  WD 2:  Seg  6    61-100      3.78  270.99  0.01379       20.0%     14.06
  WD 3:  Seg  9   112-151      6.40  379.21  0.00048       32.5%     46.88
  WD 4:  Seg 12   152-201      4.27  291.03  0.00743       22.5%     42.43
  WD 5:  Seg 15   202-248      3.42  256.09  0.02182       17.5%     51.35
  WD 6:  Seg 19   253-292      6.81  396.04  0.00029       27.5%     51.27
  WD 7:  Seg 23   296-335      5.32  334.46  0.00193       20.0%     52.30

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-35     MAC---------IKGV-----GRSASVALAP-D-AP-Y-MAAGTMAG---AVDLSF
   WD 2   61-100    IPS---------SERFNRLAWGRNGSGSEEF-A-LG-L-IAGGLVDG---NIDLWN
   WD 3  112-151    -NA---------LVGHLSVHKGPVRGLEFNAIS-SN-L-LASGADDG---EICIWD
   WD 4  152-201    LLKPSEPSHFPLLKGSGSATQGEISFISWNR-K-VQ-QILASTSYNG---TTVIWD
   WD 5  202-248    LRK------QKPIINFADSVRRRCSVLQWNP-N-VTTQ-IMVASDDDSSPTLKLWD
   WD 6  253-292    -MS---------PVREFTGHQRGVIAMEWCPSD-SS-Y-LLTCAKDN---RTICWD
   WD 7  296-335    -AE---------IVAELPAGNNWNFDVHWYP-KIPG-V-ISASSFDG---KIGIYN

   WD40 Template    TGE---------CLRTLSGHTSGVTSVSFSP-D-GK-R-LVSGSEDG---TIKVWD