Input parameters:

  Query = AT3G63460.1 (Len=1104)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G63460.1, Len=1104):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MACIKGVGRSASVALAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSDDRDLPLVGEIPSSERFNRLAWGRNGSGSE 80  
WD40-rpts      (_______________WD 1______________)                         (_________________WD

Query       81 EFALGLIAGGLVDGNIDLWNPLSLIGSQPSENALVGHLSVHKGPVRGLEFNAISSNLLASGADDGEICIWDLLKPSEPSH 160 
WD40-rpts       2_________________)           (_________________WD 3_________________)(________

Query      161 FPLLKGSGSATQGEISFISWNRKVQQILASTSYNGTTVIWDLRKQKPIINFADSVRRRCSVLQWNPNVTTQIMVASDDDS 240 
WD40-rpts      ______________WD 4______________________)(_____________________WD 5_____________

Query      241 SPTLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELPAGNNWNFDVHWYPKIPG 320 
WD40-rpts      _______)    (_________________WD 6_________________)   (_________________WD 7___

Query      321 VISASSFDGKIGIYNIEGCSRYGVEENNFGTAPLKAPKWYKRPVGASFGFGGKLVSCHARAPAKGTSSILSEVFLHSLVT 400 
WD40-rpts      ______________)                                                                 

Query      401 EQSLVSRTSEFEAAIENGDMTSLRGLCEKKSEETESEEEKETWGLLKIMFEEEGTSRTKLISHLGFTLPVAEKDQAVDGL 480 
WD40-rpts                                                                                      

Query      481 SSDLNGIRLEDTAADALDLDDSNEAAAFAMDNGEDFFNNFPAKPDTPVSTSAKDFMPSDTDFSTKGEETQEMQEEEEESS 560 
WD40-rpts                                                                                      

Query      561 DPVFDNAIQRALIVGDYKEAVDQCITANKMADALVIAHVGGTALWESTREKYLKTSSAPYMKVVSAMVNNDLRSLIYTRS 640 
WD40-rpts                                                                                      

Query      641 HKFWKETLALLCTFAQGEQWTTLCDALASKLMAAGNTLAAVLCYICAGNVDRTVEIWSRSLANERDGRSYAELLQDLMEK 720 
WD40-rpts                                                                                      

Query      721 TLVLALATGNKKFSASLCKLFESYAEILASQGLLTTAMKYLKVLDSGGLSPELSILRDRISLSAEPETNTTASGNTQPQS 800 
WD40-rpts                                                                                      

Query      801 TMPYNQEPTQAQPNVLANPYDNQYQQPYTDSYYVPQVSHPPMQQPTMFMPHQAQPAPQPSFTPAPTSNAQPSMRTTFVPS 880 
WD40-rpts                                                                                      

Query      881 TPPALKNADQYQQPTMSSHSFTGPSNNAYPVPPGPGQYAPSGPSQLGQYPNPKMPQVVAPAAGPIGFTPMATPGVAPRSV 960 
WD40-rpts                                                                                      

Query      961 QPASPPTQQAAAQAAPAPATPPPTVQTADTSNVPAHQKPVIATLTRLFNETSEALGGARANTTKKREIEDNSRKLGALFV 1040
WD40-rpts                                                                                      

Query     1041 KLNSGDISKNAADKLAQLCQALDNNDFSTALQIQVLLTTSEWDECNFWLATLKRMMVKARQNVR 1104
WD40-rpts                                                                      

7 WD40-repeats found in QUERY=AT3G63460.1 (Len=1104):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-35       3.07  241.41  0.03420       15.0%     38.10
  WD 2:  Seg  6    61-100      3.71  267.77  0.01523       20.0%     13.78
  WD 3:  Seg  9   112-151      6.28  373.98  0.00057       32.5%     46.47
  WD 4:  Seg 12   152-201      4.20  288.18  0.00811       22.5%     40.40
  WD 5:  Seg 15   202-248      3.39  254.61  0.02283       17.5%     49.42
  WD 6:  Seg 19   253-292      6.68  390.54  0.00034       27.5%     45.40
  WD 7:  Seg 22   296-335      5.12  325.96  0.00252       20.0%     51.85

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-35     MAC---------IKGV-----GRSASVALAP-D-A-PY-MAAGTMAG---AVDLSF
   WD 2   61-100    IPS---------SERFNRLAWGRNGSGSEEF-A-L-GL-IAGGLVDG---NIDLWN
   WD 3  112-151    -NA---------LVGHLSVHKGPVRGLEFNAIS-S-NL-LASGADDG---EICIWD
   WD 4  152-201    LLKPSEPSHFPLLKGSGSATQGEISFISWNR-K-V-QQILASTSYNG---TTVIWD
   WD 5  202-248    LRK------QKPIINFADSVRRRCSVLQWNP-N-VTTQ-IMVASDDDSSPTLKLWD
   WD 6  253-292    -MS---------PVREFTGHQRGVIAMEWCPSD-S-SY-LLTCAKDN---RTICWD
   WD 7  296-335    -AE---------IVAELPAGNNWNFDVHWYP-KIP-GV-ISASSFDG---KIGIYN

   WD40 Template    TGE---------CLRTLSGHTSGVTSVSFSP-D-G-KR-LVSGSEDG---TIKVWD