Input parameters:

  Query = AT3G63380.1 (Len=1033)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G63380.1, Len=1033):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRDLKEYDYSALLLNLTTSSLNKAQRRWRFAYAAIYSMRAMLSLVKEIVPARIDPKTSDASLSLSYTALESGEGAKINSM 80  
WD40-rpts                                                                                      

Query       81 PLSYVPAIDQEQLVEIMKGKDLPGIQALGGVEGVAASLRTNPTKGIHGNEQEVSRRRDLFGSNTYHKPPPKGLLFFVYEA 160 
WD40-rpts                                                                                      

Query      161 FKDLTILILLVCAIFSLGFGIKEHGIKEGWYEGGSIFVAVFLVIVVSALSNFRQERQFDKLSKISNNIKVEVLRDSRRQH 240 
WD40-rpts                                                                                      

Query      241 ISIFDVVVGDVVFLKIGDQIPADGLFLEGHSLQVDESSMTGESDHLEVDHKDNPFLFSGTKIVDGFAQMLVVSVGMSTTW 320 
WD40-rpts                                                                                      

Query      321 GQTMSSINQDSSERTPLQVRLDTLTSTIGKIGLTVAALVLVVLLVRYFTGNTEKEGKREYNGSKTPVDTVVNSVVRIVAA 400 
WD40-rpts                                                                                      

Query      401 AVTIVVVAIPEGLPLAVTLTLAYSMKRMMSDQAMVRKLSACETMGSATVICTDKTGTLTLNEMKVTKFWLGQESIHEDST 480 
WD40-rpts                                                                                      

Query      481 KMISPDVLDLLYQGTGLNTTGSVCVSDSGSTPEFSGSPTEKALLSWTVLNLGMDMESVKQKHEVLRVETFSSAKKRSGVL 560 
WD40-rpts                                                                                      

Query      561 VRRKSDNTVHVHWKGAAEMVLAMCSHYYTSTGSVDLMDSTAKSRIQAIIQGMAASSLRCIAFAHKIASNDSVLEEDGLTL 640 
WD40-rpts                                                                                      

Query      641 MGIVGLKDPCRPGVSKAVETCKLAGVTIKMITGDNVFTAKAIAFECGILDHNDKDEEDAVVEGVQFRNYTDEERMQKVDK 720 
WD40-rpts                             (____________________________WD 1________________________

Query      721 IRVMARSSPSDKLLMVKCLRLKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVATVLKWGR 800 
WD40-rpts      ____)                                                                           

Query      801 CVYNNIQKFIQFQLTVNVAALVINFIAAISAGEVPLTAVQLLWVNLIMDTLGALALATERPTNELLKRKPVGRTEALITN 880 
WD40-rpts                                                                                      

Query      881 VMWRNLLVQSLYQIAVLLILQFKGMSIFSVRKEVKDTLIFNTFVLCQVFNEFNAREMEKKNVFKGLHRNRLFIGIIAITI 960 
WD40-rpts                                                                                      

Query      961 VLQVIMVEFLKKFADTVRLNGWQWGTCIALASLSWPIGFFTKFIPVSETPFLSYFKNPRSLFKGSRSPSLKKP 1033
WD40-rpts                                                                               

1 WD40-repeats found in QUERY=AT3G63380.1 (Len=1033):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 16   664-725      3.48  258.39  0.02033       17.5%     21.30

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  664-725    AGVTIKMITGDNVFTAKAIAFECGILDHNDKDEEDAVVEGVQFRNYTDEERMQKVDKIRVMA

   WD40 Template    TGECLRTLSGHT----------SGVTSVSFSPDGKRLVSG----SED--------GTIKVWD