Input parameters:

  Query = AT3G61530.2 (Len=354)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G61530.2, Len=354):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAASLVRSCCSRASRAITTVRFMSNVPEDTVYGGPKPQNSNQRVTLTQLRQKHRKGEPITMVTAYDYPSAVHIDTAGIDV 80  
WD40-rpts                                                            (_________________________

Query       81 CLVGDSAAMVVHGYDTTLPISLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRVLKEGGMDAIKLEGGSP 160 
WD40-rpts      _______WD 1________________________________)                                    

Query      161 SRITAAKSIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNIASAVKVVETAMALQEAGCFSVVLECVPPPVAAAATSALNI 240 
WD40-rpts                                                                                      

Query      241 PTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQYAQVGEVINKALLEYKEEVSKHLFPGPSHSPYKISSSDLD 320 
WD40-rpts                                                                                      

Query      321 GFLSELQKLGLDKAASDAAASAEKMDHSDSPSSQ 354 
WD40-rpts                                        

1 WD40-repeats found in QUERY=AT3G61530.2 (Len=354):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    55-124      2.95  236.41  0.03983       17.5%     23.17

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-124    KGEPITMVTAYDYPSAVHIDTAGIDVCLVGDSAAMVVHGYDTTLPISLEEMLVHCRAVARGAKRPLLVGD

   WD40 Template    TGECLRTLSGHT------------------SGVTSVSFSPDGKRLVS------------GSEDGTIKVWD