Input parameters:

  Query = AT3G61480.1 (Len=1080)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G61480.1, Len=1080):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAYGWPQVIPLLPGSQRVVYLKLAGRLLLVVSPSHLELWGSSQQRVRLGKYMRDDKSLREEGENLQAVWSPDSKLIAVLV 80  
WD40-rpts                                     (_________________WD 1________________)   (______

Query       81 PFAGKDLSVSNFVRDSKTMLLGLSDGSLYSISWKGEFGGAFSIGSHPSASNDDRLLSYTLGNGLVSGVASPTLASDDKFS 160 
WD40-rpts      ___________WD 2________________) (___________________WD 3___________________)   

Query      161 TKPAIVQLELCTRSKLLFVLNSDGQLVVCSVNKKGLKYTESIRAEKKLGGDAVCASVASEQQILAVGTRKGMVELYDLSH 240 
WD40-rpts       (_________________WD 4________________)________________WD 5________________)   

Query      241 SISLLRTVSLHDWGYSADYTGPVNNIAWTPDNSAFAVGWKSRGLAVWSVSGCRLMSTVRQIGLTSTSSPKINPKQDCKYE 320 
WD40-rpts               (_________________WD 6________________)                  (_____________

Query      321 PLMSGTSAIQWDEYGYRLFATEEASCDRILAFSFGKCCLNRGVSGKTYVRQVMYGDDRLLMVQAEDTDELKLLHLKLPVS 400 
WD40-rpts      _______WD 7___________________)   (_________________WD 8_________________) (____

Query      401 YISQNWPVQHVAASEDGKYLAVAGLHGLILYDVRFKKWRVFGDVSQEQQIHCKGLLWLGKIVVICNFIEASETYELLFYP 480 
WD40-rpts      ____________WD 9_______________)                                                

Query      481 RYHLDQSSLLCRKVLLGKPMVMDVYQDYILVSYLPFIIHVYHVKIYGELTPSSKADLQLSTVRELSIMTAKSHPAAMRFV 560 
WD40-rpts                                                                                      

Query      561 PDQHPREGELDEDNLSSDLSEREPSRCLILRGNGELSLLDLVDGRERELTDSVELFWVTCGQSEEKTNLVEEVSWLDYGH 640 
WD40-rpts                                                                                      

Query      641 RGMQVWYPSLGDDPFMQEDFLQLDPELEFDREVYPLGLLPNVGVVVGVSQRMSFSASAEFPCFEPTPQAQTILHCLLRHL 720 
WD40-rpts                                                                                      

Query      721 LQRDKNEEALLLAQLSAEKPHFSHCLEWLLFTVFDAEISRPNPNRNQISGPGHLKKLSLLRKACDLIKNFPEYYDVVVNV 800 
WD40-rpts                                                                                      

Query      801 ARKTDARHWADLFSAAGISTTLFEDCFQRRWYRTAACYILVIAKLEGVAVSQYCALRLLQATLDESLYDLAGELVRFLLR 880 
WD40-rpts                                                                                      

Query      881 SGRDIEQAPTESDSLSPKLLGFLIFGSSHKKSSLDKSSSFKEQSPHVASVKSILESHASYLMSGKELSKLVAFVKGTQFD 960 
WD40-rpts                                                                                      

Query      961 IDFLQRERYGCAQLQNFAAGLELIGQKLQMSELQNRLDAEFLLAQMCSVKFKEWIVVLATLLQRSEVLYDIFRYDLRLWK 1040
WD40-rpts                                                                                      

Query     1041 AYSVTLESHLAFAQYHDLLQILEAKLSATSREESNRGSIS 1080
WD40-rpts                                              

9 WD40-repeats found in QUERY=AT3G61480.1 (Len=1080):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    32-70       3.78  270.60  0.01396       17.5%     30.62
  WD 2:  Seg  6    74-112      3.91  276.05  0.01180       15.0%     57.36
  WD 3:  Seg 10   114-157      4.13  285.21  0.00889       27.5%     23.97
  WD 4:  Seg 13   162-200      3.83  272.74  0.01307       15.0%     50.36
  WD 5:  Seg 16   199-237      5.37  336.29  0.00183       17.5%     53.52
  WD 6:  Seg 21   250-288      5.93  359.67  0.00088       17.5%     38.27
  WD 7:  Seg 26   307-351      3.07  241.52  0.03408       15.0%     38.22
  WD 8:  Seg 29   355-394      5.36  336.06  0.00184       17.5%     42.92
  WD 9:  Seg 32   396-432      3.89  275.28  0.01208       22.5%     40.97

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   32-70     SPSHLELWG----SSQ-----QRVRLGKYMRDDKSLREEG-ENLQAVWS
   WD 2   74-112    -KLIAVLVP----FAG-----KDLSVSNFVRDSKTMLLGLSDGSLYSIS
   WD 3  114-157    KGEFGGAFSIGSHPSA-----SNDDRLLSYTLGNGLVSGVASPTLASDD
   WD 4  162-200    -KPAIVQLE----LCT-----RSKLLFVLNSDGQLVVCSVNKKGLKYTE
   WD 5  199-237    -TESIRAEK----KLG-----GDAVCASVASEQQILAVGTRKGMVELYD
   WD 6  250-288    -LHDWGYSA----DYT-----GPVNNIAWTPDNSAFAVGWKSRGLAVWS
   WD 7  307-351    SSPKINPKQ----DCKYEPLMSGTSAIQWDEYGYRLFATEEASCDRILA
   WD 8  355-394    GKCCLNRGV----SGK-----TYVRQVMYGDDRLLMVQAEDTDELKLLH
   WD 9  396-432    --KLPVSYI----SQN-----WPVQHVAASEDGKYLAVAGLHG-LILYD

   WD40 Template    TGECLRTLS----GHT-----SGVTSVSFSPDGKRLVSGSEDGTIKVWD