Input parameters:

  Query = AT3G57140.1 (Len=801)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G57140.1, Len=801):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDISNEAGVDAFSIIGPTTIIGRTIAVRILFCNSVSIFRHKVFRILKFFLRGGRVLLSPFVSLLHPRNPQGILVMVTTMA 80  
WD40-rpts                                                                                      

Query       81 FLLNRYTSLKAKAEMAYRRKFWRNMMRAALTYEEWSHAAKMLDKETPKVNETDLFDVELVSNKLDELKHRRHEGSLRDII 160 
WD40-rpts                                                                                      

Query      161 FCMRADLVRNLGNMCNPELHKGRLHVPRLIKEYIDEVSTQLRMVCDMDTEELSLEEKLSFMHETRHAYGRTALLLSGGAS 240 
WD40-rpts                                                                         (____________

Query      241 LGAFHLGVVKTLVEHKLLPRIIAGSSVGSVMCAVVGTRSWPELQSFFEGSWHALQFFDQMGGIFTTVKRVMTQGAVHEIR 320 
WD40-rpts      _____________________________________________WD 1_______________________________

Query      321 HLQWKLRNLTNNLTFQEAYDITGRILGITVCSLRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRTGEI 400 
WD40-rpts      __________________________)                                                     

Query      401 VPYHPPFNLDPEEGSASVRRWRDGSLEMDLPMIQLKELFNVNHFIVSQANPHIAPFLRMKEFVRACGGRFAAKLAQLAEM 480 
WD40-rpts                                                                                      

Query      481 EVKHRCNQVLELGLPLREVASLFAQEWEGDVTIVMPATFSQYLKIIQNPSNVEIQKAANQGRRCTWEKLAVIKANFGIEL 560 
WD40-rpts                                                                                      

Query      561 ALDECVTVLNHMRRLKRSAERAAAFSAISSSPPSKHLLAGTNRFNASKRIPSWNCIARQNSSGSVDDDVLAEASRLYQHI 640 
WD40-rpts                                                                                      

Query      641 VVGSGRNSNRTSNLSHTYDAGSECDSPEAEDWTRSGGPLMRTNSAQMFTDYVQNLDAVDPEQIRASENDSIVAASSSSHS 720 
WD40-rpts                                                                                      

Query      721 ITVTEGDYLQTGRTHNGFVLNLVRGENLRMNSEPEDSQNESEIPETPESVQLDSPEKDIIDGESSASEDGDAQANLIHDH 800 
WD40-rpts                                                                                      

Query      801 E 801 
WD40-rpts       

1 WD40-repeats found in QUERY=AT3G57140.1 (Len=801):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   228-347      2.78  229.61  0.04896       20.0%     20.02

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  228-347    YGRTALLLSGGASLGAFHLGVVKTLVEHKLLPRIIAGSSVGSVMCAVVGTRSWPELQSFFEGSWHALQFFDQMGGIFTTVKRVMTQGAVHEIRHLQWKLRNLTNNLTFQEAYDITGRILG

   WD40 Template    TGECLRTLSGH--------------------TSGVTSVS-----------FS--------------------PDG---------KRLVSGS------------EDGT--------IKVWD