Input parameters:

  Query = AT3G56900.1 (Len=447)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G56900.1, Len=447):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQENGDKASGESKGLVATLQMK 80  
WD40-rpts                                                                                      

Query       81 VADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGANQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSL 160 
WD40-rpts              (__________________WD 1_________________)(___________________WD 2_______

Query      161 SIACRGGICIWAASYPGNMALVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW 240 
WD40-rpts      ___________)           (_______________________WD 3_______________________)(____

Query      241 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSVTGAIWDPEGRFILISFSKSS 320 
WD40-rpts      _________________WD 4____________________)     (________________WD 5____________

Query      321 TLGSVHFSSKPPSLDAHLLPVELPEIASLTGCEGIEKIAWDASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGF 400 
WD40-rpts      ___)  (___________________________WD 6___________________________)        (_____

Query      401 IRGPGENPKALSFSFHDKFKQGPLLSVCWSTGFCCTYPLIFRSHVLP 447 
WD40-rpts      ______________WD 7___________________)         

7 WD40-repeats found in QUERY=AT3G56900.1 (Len=447):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    89-129      6.67  390.01  0.00034       15.0%     31.54
  WD 2:  Seg  6   130-172      7.75  434.83  8.6e-05       22.5%     54.88
  WD 3:  Seg 11   184-235      4.03  281.22  0.01006       25.0%     38.46
  WD 4:  Seg 15   236-282      8.44  463.11  3.6e-05       20.0%     50.34
  WD 5:  Seg 19   288-324      6.19  370.51  0.00063       17.5%     51.44
  WD 6:  Seg 23   327-386      6.86  398.02  0.00027       22.5%     39.41
  WD 7:  Seg 27   395-438      6.06  365.15  0.00075       17.5%     46.08

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   89-129    -L---QP-------TDVTL-----------------LS--------------EIDLQGVSWHQ-----GKHIIAFISGANQV------TIRDYE
   WD 2  130-172    DKDEKEP-------CILTS-----------------DS--------------QRNVKALEWRP-----NGGKSL--SIACRG------GICIWA
   WD 3  184-235    SG---GS-------ALRGSLSRGSGTRWILVDFLRCQN--------------DEQISALSWSP-----CGRYLA--SASYDS------S-----
   WD 4  236-282    SF---TIWDVSQGAGTPIR-----------------RG--------------LGGISMLKWSP-----TGDYFF--AARFDG------TFCLWE
   WD 5  288-324    -----SE-------PWSLS-----------------SG--------------SGSVTGAIWDP-----EGRFIL--I-SFSK------SSTLGS
   WD 6  327-386    FS---SK-------PPSLD-----------------AHLLPVELPEIASLTGCEGIEKIAWDA-----SGERLA--VSYKGGDENYKGLIAIYD
   WD 7  395-438    -A---SL-------VGFIR-----------------GP--------------GENPKALSFSFHDKFKQGPLLS--VCWSTG------FCCTYP

   WD40 Template    TG---EC-------LRTLS-----------------GH--------------TSGVTSVSFSP-----DGKRLV--SGSEDG------TIKVWD