Input parameters:

  Query = AT3G56440.1 (Len=391)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G56440.1, Len=391):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDPRRNFQPGGYDSRNTFTSGSFGPPDFGESDEAELVSVSWNQDYSCFAAGTSHGFRIYNCEPFKETFRRELKDGGFKIV 80  
WD40-rpts                           (_________________WD 1________________)   (________________

Query       81 EMLFRSNILALVGGGPNSQYPSNKVLIWDDHQGRCISEFTFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQIENM 160 
WD40-rpts      ____WD 2____________________)   (_______________WD 3______________)   (_________

Query      161 ANPRGLCCLSHHMNTSVLACPGIRRGEVRVEHFGLNMVQIINAHDSNIACMTLTLDGLLLATASTKGTLIRIFNTMDGTR 240 
WD40-rpts      _________WD 4__________________)(__________________WD 5__________________)   (__

Query      241 LQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVIGEDAYSTEHETSSNSLQPLVSPASGANPGSSLSFLR 320 
WD40-rpts      ________________WD 6_________________)   (_________________WD 7________________)

Query      321 GVLPKYFSSEWSFSQFHVPEVTQYFAAFGAQNTIAIIGLDGSFYRCNFDPVNGGEMTQLEHFHFLKQDSPR 391 
WD40-rpts                                                                             

7 WD40-repeats found in QUERY=AT3G56440.1 (Len=391):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    22-60       4.39  296.10  0.00635       12.5%     44.56
  WD 2:  Seg  4    64-109      5.01  321.53  0.00289       15.0%     41.42
  WD 3:  Seg  8   113-147      3.68  266.64  0.01577       17.5%     43.40
  WD 4:  Seg 12   151-192      4.58  303.90  0.00499       12.5%     42.77
  WD 5:  Seg 16   193-234      7.67  431.59  9.5e-05       25.0%     56.27
  WD 6:  Seg 20   238-278      7.14  409.48  0.00019       22.5%     56.46
  WD 7:  Seg 24   282-320      6.12  367.28  0.00070        7.5%      4.96

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-60     SF-GPPDFGE--SDEAELVSVSWNQDYS---CFA-------AGT-SHG-FRIYN
   WD 2   64-109    -F-KETFRRE--LKDGGFKIVEMLFRSN---ILALVGGGPNSQYPSNK-VLIWD
   WD 3  113-147    -G-RCISEFT--FRSE-IRAVKLRRDRI---VVV-------L---EHK-IYVYN
   WD 4  151-192    -L-RLLHQIE--NMANPRGLCCLSHHMNTSVLAC-------PGIRRGE-VRVEH
   WD 5  193-234    FGLNMVQIIN--AHDSNIACMTLTLDGL---LLA-------TASTKGTLIRIFN
   WD 6  238-278    -G-TRLQEVRRGVDRADIYSIALSPNVQ---WLA-------VSSDKGT-VHIFS
   WD 7  282-320    -R-VIGEDAY--STEHETSSNSLQPLVS---PAS-------GANPGSS-LSFLR

   WD40 Template    TG-ECLRTLS--GHTSGVTSVSFSPDGK---RLV-------SGSEDGT-IKVWD