Input parameters:

  Query = AT3G50390.1 (Len=469)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G50390.1, Len=469):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSMHKKGTSRDVNSQAFTKLTKVETIPDPDIYDITYVDISPSEGSSSPLSKSPWSVQVDPSAVDSPYHSVKVTTDTTKE 80  
WD40-rpts                                          (_________________WD 1________________)     

Query       81 KSTNHSPNILLGSLVREEGHIYSLATSGDLLYTGSDSKNIRVWKNHVEFSSFKSNSGLVKAIVLAGDKIFTGHQDGKIRV 160 
WD40-rpts        (__________________WD 2__________________)(________________WD 3_______________

Query      161 WKAASKESNVHRRVGTMPNLLDYIRNSIVPSSYFNFTRRNRSSAALGFRHLDAISCLALSEDKRLLYSGSWDKTFKVWRV 240 
WD40-rpts      _)(_________________WD 4_________________)(________________WD 5_______________) 

Query      241 SDLRCVESVNAHEDAVNAVVSGFDGLVFTGSADGTVKVWRREDQAKDTKHFFSETLLKQDCAVTAIAVDQSATLVYCGSS 320 
WD40-rpts        (________________WD 6________________)(_____________________WD 7______________

Query      321 DGTVNFWERENNMKNGGVLKGHKLAVLCLVAAGNLMFSGSADLGIRVWRRPEGGGEHVCLSVLTGHAGPVKCLAVERDQE 400 
WD40-rpts      _______)(__________________WD 8_________________)(________________________WD 9__

Query      401 SVSGERRWIVYSGSLDRSVKMWRVSESSPPMVNQEFKLPDQFGGGGGGGPAELTVAPSFSAQGRISPQK 469 
WD40-rpts      ______________________)                                              

9 WD40-repeats found in QUERY=AT3G50390.1 (Len=469):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    37-75       5.74  351.79  0.00113       15.0%     -4.48
  WD 2:  Seg  5    83-124      6.63  388.38  0.00036       30.0%     54.70
  WD 3:  Seg  9   125-162      8.46  464.07  3.5e-05       20.0%     50.05
  WD 4:  Seg 13   163-202      7.14  409.67  0.00019        5.0%     25.75
  WD 5:  Seg 17   203-239      8.67  472.86  2.6e-05       30.0%     46.68
  WD 6:  Seg 20   243-280      8.48  464.87  3.4e-05       35.0%     54.76
  WD 7:  Seg 24   281-328      8.47  464.68  3.4e-05       25.0%     47.74
  WD 8:  Seg 27   329-369      6.81  395.85  0.00029       30.0%     50.15
  WD 9:  Seg 31   370-423      7.47  423.31  0.00012       35.0%     55.55

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   37-75     -Y---V--------DISPSEGSSSPLSKSPWSVQVD--------PSAVDSPYHSVKVTT
   WD 2   83-124    TN---H----SPNILLGSLVREEGHIYSLATS--GD--------LLYTGSDSKNIRVWK
   WD 3  125-162    NH---V--------EFSSFKSNSGLVKAIVLAGD----------KIFTGHQDGKIRVWK
   WD 4  163-202    AA---S--------KESNVHRRVGTMPNLLDYIRNS--------IVPSSYFNFTRRNRS
   WD 5  203-239    --------------SAALGFRHLDAISCLALSEDKR--------LLYSGSWDKTFKVWR
   WD 6  243-280    -L---R--------CVESVNAHEDAVNAVVSGFDG---------LVFTGSADGTVKVWR
   WD 7  281-328    RE---DQAKDTKHFFSETLLKQDCAVTAIAVDQSAT--------LVYCGSSDGTVNFWE
   WD 8  329-369    RENNMK--------NGGVLKGHKLAV--LCLVAAGN--------LMFSGSADLGIRVWR
   WD 9  370-423    RP---E--GGGEHVCLSVLTGHAGPVKCLAVERDQESVSGERRWIVYSGSLDRSVKMWR

   WD40 Template    TG---E--------CLRTLSGHTSGVTSVSFSPDGK--------RLVSGSEDGTIKVWD