Input parameters:

  Query = AT3G49660.1 (Len=317)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G49660.1, Len=317):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEEIPATASFTPYVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAFS 80  
WD40-rpts                  (_________________WD 1_________________)        (_________________WD

Query       81 SDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTA 160 
WD40-rpts       2________________)   (_________________WD 3________________)   (_______________

Query      161 VDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHV 240 
WD40-rpts      __WD 4________________)   (_________________WD 5_________________)   (__________

Query      241 NAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTVRIWTQKKE 317 
WD40-rpts      ________WD 6__________________)   (_________________WD 7________________)    

7 WD40-repeats found in QUERY=AT3G49660.1 (Len=317):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-52       9.41  503.29  1.0e-05       40.0%     52.36
  WD 2:  Seg  5    61-99      10.40  544.19  2.9e-06       40.0%     56.05
  WD 3:  Seg  9   103-141     10.76  559.29  1.8e-06       42.5%     53.46
  WD 4:  Seg 13   145-183     10.93  566.27  1.4e-06       45.0%     56.13
  WD 5:  Seg 17   187-226      9.13  491.65  1.5e-05       37.5%     54.94
  WD 6:  Seg 21   230-271      8.88  481.34  2.0e-05       37.5%     57.70
  WD 7:  Seg 25   275-313      9.90  523.51  5.5e-06       35.0%     54.55

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-52     PYVHSQTL-TSHNRA---VSSVKFSSDGRLLASASADKTIRTYT
   WD 2   61-99     -AEPVQEF-TGHENG---ISDVAFSSDARFIVSASDDKTLKLWD
   WD 3  103-141    -GSLIKTL-IGHTNY---AFCVNFNPQSNMIVSGSFDETVRIWD
   WD 4  145-183    -GKCLKVL-PAHSDP---VTAVDFNRDGSLIVSSSYDGLCRIWD
   WD 5  187-226    -GHCVKTLIDDENPP---VSFVRFSPNGKFILVGTLDNTLRLWN
   WD 6  230-271    -AKFLKTY-TGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWE
   WD 7  275-313    -KKLLQKL-EGHTET---VMNVACHPTENLIASGSLDKTVRIWT

   WD40 Template    TGECLRTL-SGHTSG---VTSVSFSPDGKRLVSGSEDGTIKVWD