Input parameters:

  Query = AT3G49400.2 (Len=874)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G49400.2, Len=874):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASRFQEASLVTSPSYPNAVAWSSENLIAVAAGHLVIIINPALPTGPRGLITISDAELYQIGRVRSQDLLTGGLLPSSLK 80  
WD40-rpts                                                                                      

Query       81 RERSPCVRSLSWSEIGMSPNHGCLLAVCTAEGRVKLYRPPYSDFCAEWIEIVDISKMLYENLSSMNFGESKNPSTSLSKD 160 
WD40-rpts                                                                                      

Query      161 QVVEHDHEEDERISSLKARKRRKTSANNINLHEKNYTDRASCSKQDSKAEHNVLEIEVYKQASNGQDRRSLPKALKKCSQ 240 
WD40-rpts                                                                                      

Query      241 EISPQTYVSREALLSSHSVAWSSLLRFSSESSCGNMLRFSLLAIGSKSGSVSIWKVHAPECYHIERSNVSPMVELTAIVQ 320 
WD40-rpts                    (__________________WD 1_________________)                         

Query      321 THSSWVSTMSWGIFGCDSSNPQVVLVTGSCDGSVKIWMSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVVSNHY 400 
WD40-rpts      (________________WD 2________________)                                          

Query      401 NAMHLAIGKGSGSFEVWKCEISTRKFEQIVSTNAHNQVDNYVRSWILCENAISEVPIPANTPGLSSTTDLPDDFLSCLGV 480 
WD40-rpts                                                                                      

Query      481 ALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQSGESEDSTETVTEAILGFSKNEFANWESNILWSLKEFN 560 
WD40-rpts                                                                                      

Query      561 YLNKPLVLWDMVAAMLAFKQSMPEFVELVLTKWLSVSYLGFHDDISMEDLVPKITKRFSDVPSRLLHILNVISRRVMLSE 640 
WD40-rpts                                                                                      

Query      641 LKTEEINRKLQGQRTNDEGEIDLWLKLLQESERELRERLVGLSFSAYLLAESSQGTISPPSWNWRPAGLALLQQWVEINR 720 
WD40-rpts                                                                                      

Query      721 DIVHSQLETLSLEVKSSRTRSSNSTETALEEEKCPYCAAPVNFHSAEEAFCESSHQKKKKSKDKERCDESHKLERCCVSM 800 
WD40-rpts                                                                                      

Query      801 QVCPPTPLWFCKCCNRMTLELAPETLFALPSFPSDLKSLPKSSFSKVASKPFCLFCGVLLQRKQPEFLLSASPV 874 
WD40-rpts                                                                                

2 WD40-repeats found in QUERY=AT3G49400.2 (Len=874):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   255-295      2.93  235.56  0.04087       17.5%     21.16
  WD 2:  Seg 12   321-358      3.86  274.02  0.01256       30.0%     20.24

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  255-295    SSHSVAWSSLLRFSSESSCGNMLRFSLLAIGSKSGSVSIWK
   WD 2  321-358    THS--S-WVSTMSWGIFGCDSSNPQVVLVTGSCDGSVKIWM

   WD40 Template    TGECLR-TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD