Input parameters:

  Query = AT3G49400.1 (Len=892)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G49400.1, Len=892):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASRFQEASLVTSPSYPNAVAWSSENLIAVAAGHLVIIINPALPTGPRGLITISDAELYQIGRVRSQDLLTGGLLPSSLK 80  
WD40-rpts                                    (_______________WD 1______________)(______________

Query       81 RERSPCVRSLSWSEIGMSPNHGCLLAVCTAEGRVKLYRPPYSDFCAEWIEIVDISKMLYENLSSMNFGESKNPSTSLSKD 160 
WD40-rpts      __________WD 2_______________________)(______________________WD 3_______________

Query      161 QVVEHDHEEDERISSLKARKRRKTSANNINLHEKNYTDRASCSKQDSKAEHNVLEIEVYKQASNGQDRRSLPKALKKCSQ 240 
WD40-rpts      ______)             (_____________WD 4_____________)(_______________WD 5________

Query      241 EISPQTYVSREALLSSHSVAWSSLLRFSSESSCGNMLRFSLLAIGSKSGSVSIWKVHAPECYHIERSNVSPMVELTAIVQ 320 
WD40-rpts      _______)   (___________________WD 6___________________)                 (_______

Query      321 THSSWVSTMSWGIFGCDSSNPQVVLVTGSCDGSVKIWMSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVVSNHY 400 
WD40-rpts      _____________WD 7____________________)                        (_______________WD

Query      401 NAMHLAIGKGSGSFEVWKCEISTRKFEQIVSTNAHNQVVTGLAWSYDGRCLYSCSQDNYVRSWILCENAISEVPIPANTP 480 
WD40-rpts       8_______________)       (_________________WD 9________________)(______________W

Query      481 GLSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQSGESEDSTETVTEAILGFSK 560 
WD40-rpts      D10_____________)   (________________________WD11_______________________)       

Query      561 NEFANWESNILWSLKEFNYLNKPLVLWDMVAAMLAFKQSMPEFVELVLTKWLSVSYLGFHDDISMEDLVPKITKRFSDVP 640 
WD40-rpts                                                                                      

Query      641 SRLLHILNVISRRVMLSELKTEEINRKLQGQRTNDEGEIDLWLKLLQESERELRERLVGLSFSAYLLAESSQGTISPPSW 720 
WD40-rpts                                                                                      

Query      721 NWRPAGLALLQQWVEINRDIVHSQLETLSLEVKSSRTRSSNSTETALEEEKCPYCAAPVNFHSAEEAFCESSHQKKKKSK 800 
WD40-rpts                                                                                      

Query      801 DKERCDESHKLERCCVSMQVCPPTPLWFCKCCNRMTLELAPETLFALPSFPSDLKSLPKSSFSKVASKPFCLFCGVLLQR 880 
WD40-rpts                                                                                      

Query      881 KQPEFLLSASPV 892 
WD40-rpts                  

11 WD40-repeats found in QUERY=AT3G49400.1 (Len=892):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    31-65       3.71  268.11  0.01508       17.5%     16.02
  WD 2:  Seg  5    66-118      4.13  285.19  0.00890       20.0%     30.64
  WD 3:  Seg  8   119-167      3.69  267.15  0.01553       15.0%     -0.97
  WD 4:  Seg  9   181-212      4.39  296.09  0.00635       10.0%     34.34
  WD 5:  Seg 12   213-248      3.20  246.68  0.02911        7.5%     -6.98
  WD 6:  Seg 13   252-295      3.87  274.51  0.01238       20.0%     47.44
  WD 7:  Seg 17   313-358      6.80  395.47  0.00029       32.5%     41.16
  WD 8:  Seg 22   383-418      5.62  347.01  0.00131       17.5%     42.53
  WD 9:  Seg 26   426-464      8.72  474.72  2.5e-05       30.0%     46.96
  WD10:  Seg 30   465-497      2.94  236.09  0.04021        7.5%     19.95
  WD11:  Seg 33   501-553      5.44  339.34  0.00166       27.5%     43.68

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-65     ------------------------------AAG----HLVIII--------NPALPT-------GPR-GL--------ITISDAELYQIGRVR
   WD 2   66-118    SQD--LLTGGLLPSSLKRERS---------PCV----RSLSWS----------EIGM-------SPNHGC--------LLAVCTAEGRVKLYR
   WD 3  119-167    -PP--YS------------DF---------CAE----WIEIVDISKMLYENLSSMNF-------GES-KN--------PSTSLSKDQVVEHDH
   WD 4  181-212    -------------------------------RR----KTSANN----------INLH-------EKN-YT--------DRASCSKQDSKAEHN
   WD 5  213-248    ------V------------LE---------IEV----YKQASN----------GQDR-------RSL-PK--------ALKKCSQEISPQTYV
   WD 6  252-295    ------A------------LL---------SSH----SVAWSS----------LLRF-------SSE-SSCGNMLRFSLLAIGSKSGSVSIWK
   WD 7  313-358    ---VELT------------AI---------VQT----HSSWVS----------TMSWGIFGCDSSNP-QV--------VLVTGSCDGSVKIWM
   WD 8  383-418    AVN--PV------------QV-----------------STLSF----------VVSN-------HYN-AM--------HLAIGKGSGSFEVWK
   WD 9  426-464    -FE--QI------------VS---------TNA----HNQVVT----------GLAW-------SYD-GR--------CLYSCSQDNYVRSWI
   WD10  465-497    ------------------------------LCE----NAISEV----------PIPA-------NTP-GL--------SSTTDLPDDFLSCLG
   WD11  501-553    SPG--NL------------AVALVRNFNVELLNPMYQARSQKA----------AVEF-------LWN-GA--------QQSGESEDSTETVTE

   WD40 Template    TGE--CL------------RT---------LSG----HTSGVT----------SVSF-------SPD-GK--------RLVSGSEDGTIKVWD